DC900391

Overview
NameDC900391
Unique NameDC900391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1241
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3618 contig Csv1_Contig3618:126..1366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900391 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.223e-12
Identity = 84/348 (24.14%), Postives = 140/348 (40.23%), Query Frame = 3
Query:   39 KSPIVLSKTEPIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGD----------------------TVC------GFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDXLYDPVGGKLTKES-LKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIAFD 995
            K P+ + + E  P++ S   V VR+KA  + + +     G +  KP LP +PG +  G ++ VGP V++ KVGD                      T+C      G++  G +A++  A    +  +P       AA +  A  T++ AL  +   +                   Q  K  G  ++AV  G EK++  K LG D VV+  ++     +KE     K+ GV         K   ES  K +  G   +++G    EIP IP    ++    + G   G+ K          L+E L +AA+G +   I         N  F  +   ++ G+V++  D
Sbjct:   10 KKPLQVKEVEK-PKI-SYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL--KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDLGDEKLELAKQLGADLVVNPKHDDAAQWIKE-----KVGGVHATVVTAVSKAAFESAYKSIRRGGACVLVGLPPEEIP-IPIFDTVLNGVKIIGSIVGTRK---------DLQEALQFAAEGKVKT-IVEVQPLENINDVFDRMLKGQINGRVVLKVD 337          
BLAST of DC900391 vs. ExPASy Swiss-Prot
Match: INC11_TRIAT (Protein indc11 OS=Trichoderma atroviride GN=indc11 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.365e-11
Identity = 77/280 (27.50%), Postives = 116/280 (41.43%), Query Frame = 3
Query:   99 VRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHR-AQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDXLYDPVGGKLTKESLKLLNWGAQILVIGF---------ASGEIPVIPANIALVKN---WTVHGLYWGSYKIHRPH-VLEDSLRELLLWAAKGLIT 896
            V+V++       A+    LG Y  +   PF PG  ++G V   GP    F+ G  V       S A++I   +  L  +P G D   AAALPV + T++  +VHR A++S GQ                 +  + GAT+   A        LK  G  H    +N+  I ++K+      L GV  ++D +G +   ES  +L    + +V+ +         A    P IP    L KN   W+  G  +  Y I R     E  L+ LL     G+IT
Sbjct:   35 VQVKILYAGFAGADVNMRLGVYPMQSAPPFTPGYCFAGRVSVNGPGSGKFEPGTLVTALTKYDSDAEYINIPEKYLLAIPDGVDPKVAAALPVDWSTAY-GMVHRAAKVSEGQRVFIHGISGAVGQAVMYLSLLQGATVYGTA-SERNHAALKEAGA-HPYLYTNKDWIAAMKD------LGGVHAVFDALGFESFDESYSILTPKERSVVVAYGNNLSNLTGAKRRSPWIPMAKLLFKNLYFWSNKGAIF--YFITRDQKTFEPELQLLLNMTRDGIIT 303          
BLAST of DC900391 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.268e-11
Identity = 82/349 (23.50%), Postives = 140/349 (40.11%), Query Frame = 3
Query:   39 KSPIVLSKTEPIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGD----------------------TVC------GFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVD-XLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIAFDD 998
            K P+ + + E  P + S   V VR+KA  + + +     G +  KP LP +PG +  G V+ VGP V++ KVGD                      T+C      G++  G +A++  A    +  +P       AA +  A  T++ AL  +   +                   Q  K  G  ++AV  G EK++  K LG D VV+   E     +KE     K+ GV   +   V     + +   +  G   +++G    E+P IP    ++    + G   G+ K          L+E L +AA+G +   I       + N  F  +   ++ G+V++  +D
Sbjct:   10 KEPLKIKEVEK-PTI-SYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL--KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKE-----KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMP-IPIFDTVLNGIKIIGSIVGTRK---------DLQEALQFAAEGKVKT-IIEVQPLEKINEVFDRMLKGQINGRVVLTLED 338          
BLAST of DC900391 vs. ExPASy Swiss-Prot
Match: YOGA_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yogA OS=Bacillus subtilis GN=yogA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.880e-11
Identity = 70/344 (20.35%), Postives = 131/344 (38.08%), Query Frame = 3
Query:   27 IHDEKSPIVLSKTEPIPQLNSSTA-VRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAAL--------------------GSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDXLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIAFD 995
            IH+ K+ ++    + +P        V+V++K+  LN+ +   +  K ++ P +  + GSD +G ++ +G  V N  V   V  F  L                    G+ A++++         P       A  LP++  T++ AL  + QL  G+                 + K  GAT+   +R  EK K    LG D+  D        S   + +  + K +D + D +G  L  E  + +    +I+  G +SG+    P          V G   GS          +  + +L +  K  +   I   Y   +A  A+  +++ +  G + I  +
Sbjct:    5 IHNGKAGLLGLSVQDVPSTKPGYGEVKVKLKSAGLNHRDLFLMKNKSEQDPHM--ILGSDGAGIIEEIGEGVKNVTVQTEVVIFPTLNWDLTENVPPVPEILGGPSDGTLAEYVIIPSQNAIKKPAYLSWEEAGVLPLSALTAYRALFTKGQLKKGEHLLIPGIGSGVATYALFMAKAIGATVSVTSRSEEKRKKALKLGADYAFD--------SYSNWDEQLQGKKIDVVLDSIGPALFSEYFRHVKPNGRIVSFGASSGDNLSFPVRSLFFPQVNVLGTSMGS---------GEEFQAMLAFIDKHKLRPVIDRIYPLEKACEAYKRMQEGRQFGNIGIVME 329          
The following BLAST results are available for this feature:
BLAST of DC900391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ADH1_BACST6.223e-1224.14Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
INC11_TRIAT2.365e-1127.50Protein indc11 OS=Trichoderma atroviride GN=indc11... [more]
ADH3_BACST5.268e-1123.50Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
YOGA_BACSU6.880e-1120.35Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionDC900391 VSS Citrus sinensis cDNA clone VS28964 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900391 ID=DC900391; Name=DC900391; organism=Citrus sinensis; type=EST; length=1241bp
GGAAACTGGGCGATCCAACGGTCTCAATTCACGATGAAAAATCGCCGATT
GTGTTGAGTAAAACTGAGCCAATTCCACAATTGAATTCTTCAACTGCAGT
TAGAGTCAGAGTGAAAGCCACCAGCTTGAACTACGCTAATTACTTGCAGA
TATTGGGGAAATATCAAGAGAAACCACCATTGCCCTTCGTCCCCGGCTCC
GATTATTCGGGCACTGTTGATGCGGTGGGCCCCAATGTCTCAAATTTCAA
AGTGGGTGACACTGTTTGTGGATTTGCTGCCCTTGGCTCCTTTGCCCAAT
TCATCGTCGCTGATCAGTCAGAATTGTTTCCAGTGCCAAAGGGATGTGAT
TTGTTGGCTGCTGCTGCACTTCCTGTTGCATTTGGAACCTCACATGTTGC
TCTTGTTCATCGGGCCCAATTGTCCTCCGGTCAGGTCTTGCTTGTTCTTG
GTGCTGCTGGAGGTGTTGGTGTTGCCGCTGTTCAAATTGGCAAGGTTTGC
GGAGCCACTATCATTGCCGTTGCTAGGGGTGCTGAAAAGATAAAATTTTT
GAAGTCATTGGGCGTCGATCATGTAGTTGACTTGAGCAATGAGAGTGTCA
TTCCGAGTGTCAAAGAGTTCCTCAAGGCAAGGAAACTCAAAGGGGTTGAT
GNTCTATATGATCCTGTTGGAGGCAAGCTTACTAAAGAATCCTTGAAGCT
TTTGAACTGGGGTGCTCAAATCTTAGTCATTGGCTTTGCAAGTGGGGAGA
TTCCAGTAATCCCTGCTAATATTGCTCTTGTTAAGAACTGGACGGTACAC
GGACTTTACTGGGGTAGCTATAAAATACATCGCCCTCATGTGCTTGAAGA
TTCTCTTAGGGAGTTACTCTTATGGGCTGCAAAGGGCTTGATTACCATCC
ATATTTCTCATACTTACAGTCCATCAGAGGCCAACCTTGCCTTCTCTGCC
ATTGAAGATAGGAAAGTAATTGGAAAGGTGATGATTGCTTTTGATGACAT
GAAAAGTATCAGGCCTAGGCTTTAAGTTGATCATCATTACTGGGCTGGTA
TGCAATGGAGAATGTTTCTGCGGCTCTTGATCATCAAAATTAGCCTTAAT
TAATACATGGCACATTTAGTTGCTCTTATATGAGAGAAAATCTATGACTT
TGTTGTGAAGCATGAGAATGCAAGTCCCTGGCAATTAAGGTTGTCAAAAT
TTGGATAACAATGAATGCGAAATAAGTACCGTAAAACCTTC
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