CX043828

Overview
NameCX043828
Unique NameCX043828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3941 contig Csv1_Contig3941:293..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043828 vs. ExPASy Swiss-Prot
Match: XYLS_ECOLI (Alpha-xylosidase OS=Escherichia coli (strain K12) GN=yicI PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 69/282 (24.47%), Postives = 112/282 (39.72%), Query Frame = 1
Query:   28 SLYGLGENTQPHGIKLYPNDPYTLYTTDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYKGTSLTYKIIGGVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNL--SVVEDVVENYKKAKIPLDVIWNDDDHMDGHK--DFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGVYQRGIANDVFIKY-EGEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIR------------RFHELVPVDGLWID 822
            ++YGLGE            +  T+ T +          Y + P YM  R   G    H   +    G +   K + + + +     +++   GP+P AV+D+YT F GRPA  P WS G         N   + V   ++   +  +PL V   D   M   +  DF  +P  +P P+    + ++   G+K  V I+P IG  S   V++        +K  +G  +    W   +   DF NP    W+ D+++             F E +P D  W D
Sbjct:  161 TVYGLGER-----FTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGY-GVLVNHPQCVSFEVGSE---KVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPE--GMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFD 429          
BLAST of CX043828 vs. ExPASy Swiss-Prot
Match: XYLS_SULSO (Alpha-xylosidase OS=Sulfolobus solfataricus GN=xylS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.470e-11
Identity = 69/281 (24.56%), Postives = 121/281 (43.06%), Query Frame = 1
Query:   10 KLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAINL-----NTDLYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYKGTSLTYKIIGGVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMD--GHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGVYQRGIANDVFIKYEGEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNE 831
            +L +   +YGLG++   +G+        + Y  D S ++      NTD+     V      +  +  + G + L  N + V+++         G   D+Y   G S   V+  Y    G    +P W+ G+ Q +  Y +   +  VV+ +++ KIPLDVI  D  +    G   F  + T++PRPK    +E+IHK+G K  + I P  G  +           +VF   E +  +     G   F  F +     +W   ++ F++L  +D  W+D +E
Sbjct:  107 ELSEGERVYGLGQHAGGNGL-----GQSSAYKLDYSGLSTTLSQRNTDIGIPFIVSSKGYGILWDNYSLGSISLRRNKLKVWFEA--------GKKIDYYVIYGDSIDDVIKGYRKLTGDAPLLPKWAYGYWQSKERYKSQDEITSVVKEFRERKIPLDVIVLDWRYWGKYGWNAFKFDETDFPRPK--DMVEEIHKMGAKLAISIWPTFGKET-----------EVFKDMESKGCIIL---GTTAFNPFKDECRELFW-SYVKGFYDL-GIDAYWLDASE 356          
The following BLAST results are available for this feature:
BLAST of CX043828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XYLS_ECOLI3.867e-1224.47Alpha-xylosidase OS=Escherichia coli (strain K12) ... [more]
XYLS_SULSO1.470e-1124.56Alpha-xylosidase OS=Sulfolobus solfataricus GN=xyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F11-L21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043828 ID=CX043828; Name=CX043828; organism=Citrus sinensis; type=EST; length=887bp
ATTTCCACAAAATTACCAAAAGATGCCTCACTGTACGGTCTAGGTGAAAA
CACACAGCCACATGGAATCAAACTGTACCCAAATGATCCTTACACTCTGT
ACACGACTGATGTTTCAGCCATTAATCTTAACACTGATCTTTACGGGTCT
CACCCGGTGTACATGGATCTTAGGAATGTGAATGGTGAGGGTGCAGCCCA
TGGAGTGCTGCTGCTTAGCAGCAATGGCATGGATGTTTTCTATAAAGGAA
CATCTTTGACGTACAAAATTATTGGGGGTGTTTTCGACTTTTACTTCTTC
GCCGGGCCTTCACCGCTTGCTGTTGTTGATCAGTATACAGCATTTATTGG
GAGGCCTGCTCCTATGCCTTACTGGTCTCTAGGATTCCACCAGTGCAGAT
GGGGTTACCATAACCTGTCTGTGGTCGAAGATGTTGTTGAGAACTACAAG
AAGGCTAAAATTCCACTCGATGTGATCTGGAATGATGATGATCACATGGA
CGGACACAAGGATTTCACTCTCAATCCTACCAACTATCCTCGTCCGAAGC
TTTTGGCATTCCTTGAAAAAATACATAAAATAGGCATGAAATACATTGTC
ATTATTGACCCTGGAATTGGAGTAAATTCTAGCTATGGTGTGTATCAAAG
AGGTATAGCGAATGATGTTTTCATCAAGTATGAGGGTGAACCCTACTTGG
CTCAAGTTTGGCCTGGGGCTGTCAATTTTCCTGACTTCCTCAATCCAAAA
ACCGTTTCATGGTGGGGTGATGAAATTCGCCGCTTTCATGAACTTGTCCC
TGTAGATGGCTTGTGGATTGACATGAATGAAGCTTCAAATTTCTGTTCTG
GACTTTGCAAAATACCTAAGGGCAAGCAATGTCCAAC
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