CX043822

Overview
NameCX043822
Unique NameCX043822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:171..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043822 vs. ExPASy Swiss-Prot
Match: FET3_CANGA (Iron transport multicopper oxidase FET3 OS=Candida glabrata GN=FET3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 55/192 (28.65%), Postives = 79/192 (41.15%), Query Frame = -3
Query:  126 NTINGFTKWAINNVSLTLPPTPYLGSIKHGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIKPNVSEIHPWHLHGHDFWVL----GYGEGKFTK-----EDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHLHMGMGVVLALGVETVGNIPNQAL 674
            N ING      NN++ T P  P L ++                 S   D + P +    T     ++L     VD+I+ N +  K      HP+HLHGH F  +     + + K  K     + +           +T  + P     LRF ADNPG W FHCHIE HL  G+ VV+     ++ N  +Q L
Sbjct:  347 NLINGVNYAFFNNITYTTPKVPTLLTV----------------LSAGQDALNPFIYGTNT---NTFVLKKGEVVDLIVNNQDTGK------HPFHLHGHVFQTILRDREFDDAKGEKPHSFNDSDHAAYPSIPMKRDTVYLNPQSNMVLRFKADNPGVWFFHCHIEWHLLQGLAVVMVEDPISIQNTASQHL 513          
BLAST of CX043822 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 35/88 (39.77%), Postives = 42/88 (47.73%), Query Frame = -3
Query:  177 NANAIKPNVSEIHPWHLHGHDFWVLGYGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHLHMGMGV 437
            N N +  NV   HP HLHGHDF++LG G G +                    + P G W  L F  DNPGAW  HCHI  H+  G+ V
Sbjct:  365 NGNPVSINVP--HPMHLHGHDFFLLGTGVGTYNNTINGPSLDYDNPTRRDVAMLPAGGWMVLAFQTDNPGAWLMHCHIAWHVSEGLAV 450          
BLAST of CX043822 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 53/229 (23.14%), Postives = 91/229 (39.74%), Query Frame = -3
Query:  114 KSFSNKIFALMGSPKPPTNFH-------RRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKHGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIKPNVSEIHPWHLHGHDFWVLGYGEGKFTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHLHMGMGVVLAL-----GVETVGNIPNQALACGL 764
            +SF   + A    P P  ++H       R + L+NTQ  ++G  ++A+N VS T P TP   +   G+ D   +      +    D   P    N  +   V  +   T V+V+ +N      +   +  WHL G+ F+ +    G +T E             +T  ++P  W A+    DN G W          ++G  +  ++      +    N+P  +L CGL
Sbjct:  325 RSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGKLRFALNGVSHTEPETPLKLAEYFGISDKVFK------YDTITDDPTPEQIKNIKIEPNVLNITHRTFVEVVFEN------HEKSVQSWHLDGYSFFSVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKCWAAILLTFDNCGMWNVRSENTERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCGL 541          
The following BLAST results are available for this feature:
BLAST of CX043822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
FET3_CANGA3.255e-1228.65Iron transport multicopper oxidase FET3 OS=Candida... [more]
LAC3_BOTFU1.615e-1139.77Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]
ASOL_BRANA3.598e-1123.14L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F06-L11-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043822 ID=CX043822; Name=CX043822; organism=Citrus sinensis; type=EST; length=799bp
CGAAATTTTATTAATATAAATATCAAAACAACAATAGAAACTCTAGGAAT
AAAGTACATAAAACAAACTAGCTAGCCTCAATTTTGTTTAGGGTTCATGA
ACCTTTTCCCAGTCAAACCACAAGCCAACGCCTGGTTTGGAATATTACCA
ACGGTTTCAACACCAAGAGCAAGAACCACACCCATTCCCATATGCAAATG
GGGCTCAATATGGCAGTGAAATGCCCAAGCACCTGGATTATCAGCAACAA
ATCTTAAAGCAGTCCAGCCATATGGGAATATCACCGCAGTATTTTTCAAT
GGTGGATTCTTCAAGTTAAATTTCTTCTCATCTTCTTTCGTAAACTTCCC
TTCTCCGTACCCTAATACCCAAAAATCATGCCCATGCAAATGCCAAGGGT
GGATTTCACTCACGTTTGGCTTTATCGCGTTTGCATTTTGAAGTATAACA
TCAACTGTGGTGTTTAAACCAAGCATGTAAACCCCACTTCCAAGAGTTGT
ATTAGCGTTTACTGGAGGTTTCATCACGTCATACTCATTCGAGAAGTTTT
CGGGGGGACCATTCTGATCAAAAGCATCTTTAAGACCATGTTTGATGGAT
CCTAAGTAAGGAGTGGGGGGTAAAGTCAGGGACACATTGTTAATAGCCCA
CTTAGTGAACCCGTTAATGGTGTTTTGAGTGTTAAGAAGGGTGAGCCGAC
GGTGGAAATTTGTGGGAGGCTTGGGGGATCCCATTAGGGCAAATATTTTG
TTGGAGAATGATTTGCTGTGATCATAGTCGTCCCATCTAGGAGTTATAG
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