CX043821 | Citrus Genome Database

Overview


Name	CX043821
Unique Name	CX043821
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	698

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 613
            D +FAELY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  939 DDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055

HSP 2 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1

Query:    1 HCPIWYGY-NGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            H P+ YGY NG LK LER +YINT +YP TS+PL+AYCTLPA CLLT KFI+P IS FAS++FI LFISIFATGILE+RWSGV IE+ WR
Sbjct:  807 HSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWR 896

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 613
            D +FAELY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  939 DDEFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055

HSP 2 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1

Query:    1 HCPIWYGY-NGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            H P+ YGY NG LK LER +YINT +YP TS+PL+AYCTLPA CLLT KFI+P IS FAS++FI LFISIFATGILE+RWSGV IE+ WR
Sbjct:  807 HSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWR 896

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 2

Query:  266 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 613
            +F +LY+FKWT+LLIPPTT++I+N+VG+VAGVS AIN+GY SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF    T      QCG++C
Sbjct:  935 EFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLK-QCGVDC 1049

HSP 2 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 1

Query:    1 HCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            HCP+WY + G+LK+LERLAYINTIVYP TSIPL+AYCT+PA CLLT KFIIP I+NFAS+WF+ LF+SI AT ILE+RWSGV I D WR
Sbjct:  802 HCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWR 890

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = 2

Query:  269 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 613
            F ELY+FKWT+LL+PPTT++I+N+VGIVAGVS A+N+GY SWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF     K      CG++C
Sbjct:  950 FGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFI-PKPKGPVLKPCGVSC 1063

HSP 2 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = 1

Query:    1 HCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            HCP+WY Y GRLK LER AY NTIVYP TSIPL+AYCT+PA CLLT KFIIP ++N AS+WFI LF+SI ATG+LE+RWSGV IED WR
Sbjct:  816 HCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWR 904

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.919e-43
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 2

Query:  245 LVLRTDGD-----FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 604
            L  ++ GD     +A+LY+ KW+SL+IPP  + +VN++ IV      I      W  L G  FF+ WV+AHLYPF KGL+GR+ +TPTIV VW+ L+A   SLLW  ++P T     A   G  G
Sbjct:  983 LTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGG 1107

HSP 2 Score: 82.0333 bits (201), Expect = 4.919e-43
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 1

Query:   31 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            RLK L+RLAY+N  +YP TS+ LI YC LPAF L + +FI+  +S    ++ +++ I +    +LE++WSG+G+E+ WR
Sbjct:  871 RLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWR 949

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 604
            D +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1012 DDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121

HSP 2 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 30/81 (37.04%), Postives = 55/81 (67.90%), Query Frame = 1

Query:   25 NGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            + ++K+L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  ++     + +++ I++    +LEI+WSG+ +E+ WR
Sbjct:  888 SSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWR 968

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 604
            D +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1012 DDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121

HSP 2 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 30/81 (37.04%), Postives = 55/81 (67.90%), Query Frame = 1

Query:   25 NGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            + ++K+L+R+AY+N  +YP TS+ LI YC LPA  L + +FI+  ++     + +++ I++    +LEI+WSG+ +E+ WR
Sbjct:  888 SSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWR 968

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 559
            D +FA+LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1032 DDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131

HSP 2 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = 1

Query:   31 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            R+K+L+R+AY+N  +YP TS  LI YC LPA  L + +FI+  ++    ++ +++ I++    +LEI+WSG+ +E+ WR
Sbjct:  910 RMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWR 988

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 559
            D +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1057 DDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156

HSP 2 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 1

Query:   31 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            ++K L+R+AY+N  +YP TSI LI YC LPA  L + +FI+  ++     + +++ +++    +LEI+WSG+ +E+ WR
Sbjct:  935 KMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWR 1013

[Close]

BLAST of CX043821 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 2

Query:  260 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 559
            D +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1057 DDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156

HSP 2 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 1

Query:   31 RLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIED*WR 267
            ++K L+R+AY+N  +YP TSI LI YC LPA  L + +FI+  ++     + +++ +++    +LEI+WSG+ +E+ WR
Sbjct:  935 KMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWR 1013

The following BLAST results are available for this feature:

BLAST of CX043821 vs. ExPASy Swiss-Prot

BLAST of CX043821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40


Match Name	E-value	Identity	Description
CESA9_ORYSJ	5.023e-48	73.73	Cellulose synthase A catalytic subunit 9 [UDP-form...	[more]
CESA9_ORYSI	5.023e-48	73.73	Cellulose synthase A catalytic subunit 9 [UDP-form...	[more]
CESA4_ARATH	4.701e-46	72.41	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA7_ORYSJ	6.789e-45	71.30	Cellulose synthase A catalytic subunit 7 [UDP-form...	[more]
CSLD4_ARATH	4.919e-43	43.20	Cellulose synthase-like protein D4 OS=Arabidopsis ...	[more]
CSLD1_ORYSJ	3.998e-29	53.04	Cellulose synthase-like protein D1 OS=Oryza sativa...	[more]
CSLD1_ORYSI	3.998e-29	53.04	Cellulose synthase-like protein D1 OS=Oryza sativa...	[more]
CSLD3_ARATH	6.820e-29	57.00	Cellulose synthase-like protein D3 OS=Arabidopsis ...	[more]
CSLD2_ORYSJ	6.820e-29	57.00	Cellulose synthase-like protein D2 OS=Oryza sativa...	[more]
CSLD2_ORYSI	6.820e-29	57.00	Cellulose synthase-like protein D2 OS=Oryza sativa...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_13F05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F05-L9-1-7.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX043821 ID=CX043821; Name=CX043821; organism=Citrus sinensis; type=EST; length=698bp
CATTGCCCTATATGGTATGGCTACAATGGGAGATTGAAGCTTTTGGAGAG
ACTGGCGTACATTAACACTATTGTCTACCCACTGACCTCCATCCCACTAA
TTGCTTACTGCACGCTTCCTGCTTTTTGCCTTCTTACTAATAAATTCATC
ATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTTATTCTACTTTTCAT
TTCCATTTTTGCTACTGGAATACTGGAGATTAGATGGAGTGGGGTTGGTA
TTGAGGACTGATGGAGATTTTGCAGAGCTTTATGTATTCAAATGGACATC
TCTTCTCATCCCTCCAACTACAGTCCTGATTGTGAACTTGGTGGGTATTG
TAGCTGGTGTATCATGGGCCATAAACAGTGGTTACCAATCATGGGGTCCA
CTCTTTGGCAAGCTATTCTTTGCCATATGGGTCATTGCCCATCTGTATCC
TTTCCTGAAGGGTCTGTTGGGTCGTCAAAACCGCACACCAACAATTGTCA
TTGTGTGGTCTATCCTACTTGCTTCCATTTTCTCCTTGCTGTGGGTGCGT
GTTGATCCCTTTACCTCTGATGACACCAAAGCCAATTCAAACGGTCAATG
TGGCATCAATTGCTAGTGCATGTTGGATGATTATTTGTGGCTTCAAATGC
CATTCTTCCTTCAAGCTCTCATCAGTGTATATAAGAAGAAATTATGTC