CX043820

Overview
NameCX043820
Unique NameCX043820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.442e-47
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = -2
Query:  377 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 730
            DG+F+ELY+FKWTSLLIPPTT+LI+N++G++ G+S AI++GY SWGPLFG+LFFA WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  953 DGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1068          

HSP 2 Score: 35.8094 bits (81), Expect = 1.442e-47
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = -1
Query:  723 LFISIFATGILEIRWSGVGIED*WR 797
            LF SI  TGILE++W  VGI+D WR
Sbjct:  888 LFGSIAVTGILEMQWGKVGIDDWWR 912          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 7.068e-47
Identity = 77/118 (65.25%), Postives = 100/118 (84.75%), Query Frame = -2
Query:  377 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 730
            DG+F++LY+FKWTSLLIPP T+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  968 DGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1083          

HSP 2 Score: 36.1946 bits (82), Expect = 7.068e-47
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = -1
Query:  723 LFISIFATGILEIRWSGVGIED*WR 797
            LF SI  TGILE++W  VGI+D WR
Sbjct:  903 LFSSIAITGILEMQWGKVGIDDWWR 927          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.876e-46
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = -2
Query:  377 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 724
            +F +LY+FKWT+LLIPPTT++I+N+VG+VAGVS AIN+GY SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF    T      QCG++C
Sbjct:  935 EFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLK-QCGVDC 1049          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.486e-45
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = -2
Query:  377 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 721
            F ELY+FKWT+LL+PPTT++I+N+VGIVAGVS A+N+GY SWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF     K      CG++C
Sbjct:  950 FGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFI-PKPKGPVLKPCGVSC 1063          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  386 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 730
            D +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1012 DDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  386 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 730
            D +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1012 DDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.525e-29
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  431 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 730
            D +FA+LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1032 DDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.525e-29
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = -2
Query:  431 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 730
            D +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1057 DDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.525e-29
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = -2
Query:  431 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 730
            D +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1057 DDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX043820 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.454e-28
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  431 DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 730
            D +FA+LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1032 DDEFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
The following BLAST results are available for this feature:
BLAST of CX043820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA5_ARATH1.442e-4766.10Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH7.068e-4765.25Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA4_ARATH5.876e-4672.41Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ8.486e-4571.30Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CSLD1_ORYSJ4.998e-2953.04Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI4.998e-2953.04Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH8.525e-2957.00Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ORYSJ8.525e-2957.00Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI8.525e-2957.00Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH1.454e-2857.00Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F05-L9-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043820 ID=CX043820; Name=CX043820; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTGAGGATTACATTGTTTCTTAGCGCTCTGAACTT
GAGAAAATGGAGCTTCACAACTTAGGTCCAACACAACTAAACAAGTAGGG
ACCAACATCAAGCATCTGTATGGAAGTTACAAAACGATATAAGAATAAAT
ATTAAATAAGATACAAAAAGGGTTTTACTAAAGCCTCAAGTCCTCCTTAG
TAGGCTCCACGACAAATGAAAAGATCCCATATCATCAAACTCCTTTCTCC
AGACCGACGAGAAGTAAATTAACTTACGATCATTTCCCAATGACATAATT
TCTTCTTATATACACTGATGAGAGCTTGAAGGAAGAATGGCATTTGAAGC
CACAAATAATCATCCAACATGCACTAGCAATTGATGCCACATTGACCGTT
TGAATTGGCTTTGGTGTCATCAGAGGTAAAGGGATCAACACGCACCCACA
GCAAGGAGAAAATGGAAGCAAGTAGGATAGACCACACAATGACAATTGTT
GGTGTGCGGTTTTGACGACCCAACAGACCCTTCAGGAAAGGATACAGATG
GGCAATGACCCATATGGCAAAGAATAGCTTGCCAAAGAGTGGACCCCATG
ATTGGTAACCACTGTTTATGGCCCATGATACACCAGCTACAATACCCACC
AAGTTCACAATCAGGACTGTAGTTGGAGGGATGAGAAGAGATGTCCATTT
GAATACATAAAGCTCTGCAAAATCTCCATCAGTCCTCAATACCAACCCCA
CTCCATCTAATCTCCAGTATTCCAGTAGCAAAAATGGAAATGAAAAG
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