DC900384

Overview
NameDC900384
Unique NameDC900384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig649 contig Csv1_Contig649:620..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.718e-16
Identity = 52/135 (38.52%), Postives = 70/135 (51.85%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEAS 407
            IN  P         ++     G L PLAI+LS  P  +SP    I+    D    W W LAK  V + +   H+ + H L +H   E + +AT RQL   HP++KLL PH RYTL IN LAR+ LI  G +++ S
Sbjct:  303 INGKPQFSAAPMTLLYQSPGCGPLLPLAIQLSQTPGPNSP----IFLPTDDK---WDWLLAKTWVRNAEFSFHEALTHLLHSHLLPEVFTLATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIVPGQVVDRS 430          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12L_MOUSE (Arachidonate 12-lipoxygenase, leukocyte-type OS=Mus musculus GN=Alox12l PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 7.468e-16
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+AI+L LP T S+P    I+T   D    W+  LAK  V S+D  +H+L  H L  H   E + +AT R L S+HP++KLL PH+ YT+EIN  AR  LI+  G  +   S  G
Sbjct:  310 GQLLPIAIQLELPKTGSTPPP--IFTP-LDPPMDWL--LAKCWVRSSDLQLHELQAHLLRGHLVAEVFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKVMSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 49/135 (36.30%), Postives = 69/135 (51.11%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEAS 407
            IN  P         ++    +G L P+AI+L   P   +P    I+    D    W W LAK  V + +  +H+ + H L  H   E + +AT RQL   HP++KLL PH RYTL IN LAR+ LI  G +++ S
Sbjct:  304 INGKPQFSAAPMTLLYQSPGSGPLLPIAIQLKQTPGPDNP----IFLPSDDK---WDWLLAKTWVRNAEFSIHEALTHLLHAHLIPEVFALATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIAPGKVVDKS 431          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+AI+L LP   S P    + T          W LAK  V S+D  +H+L +H L  H   E   +AT R L S+HP++KLL PH+RYT+EIN  AR  L++  G+ +   S  G
Sbjct:  310 GKLLPMAIQLQLPHKGSPPPPLFLPTD-----PPMTWLLAKCWVRSSDFQLHELHSHLLRGHLVAEVIAVATMRCLPSIHPMFKLLIPHLRYTMEINIRARTGLVSDSGVFDQVVSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE 401
            G L P+ I+L  PP    P           +     W LAK  V S+D  +HQL +H L  H   E   +AT R L S+HPIYKLL PH RYT+EIN LAR +L++  GI +
Sbjct:  309 GRLLPMVIQLQ-PPRHGCPPPLLFLP----SDPPMAWLLAKIWVRSSDFQLHQLQSHLLRGHLMAEVISVATMRSLPSLHPIYKLLAPHFRYTMEINTLARNNLVSEWGIFD 415          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L+P+ I++  PP  SSP      T    +     W LAK+ V ++D  +H++  H L TH   E   +AT R L  +HPI+K L PH+RYT+EIN  AR  LI+ GGI + + S  G
Sbjct:  309 GKLQPMVIQIQ-PPNPSSPTP----TLFLPSDPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGG 422          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   45 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            + + N A  + P+AI+L+  P  S+P    I+       + + W LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HP++KLL  H+R+T+ IN  AR+ LI   G+ + + +  G
Sbjct:  312 LLYKNLANKIVPIAIQLNQTPGESNP----IFL---PTDSKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGG 430          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+ I+L LP   S      + T         +W LAK  V S+D  +H+L +H L  H   E   +AT R L S+HPI+KLL PH RYT+EIN  AR  L++  GI +   S  G
Sbjct:  310 GKLLPMVIQLQLPREGSPLPPLFLPTD-----PPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAVATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   45 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            + + N A  + P+AI+L+  P   +P    I+    DA   W+  LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HPI+KLL  H+R+T+ IN  AR+ LI   G+ + + +  G
Sbjct:  311 LLYKNLANKIVPIAIQLNQAPGEKNP----IFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITHLLCTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGG 429          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 3.138e-14
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+AI++  PP  SSP      T    +     W LAK  V ++D  + +L  H L TH   E   +AT R L  +HPI+KLL PH+RYT+EIN  +R  LI+ GGI +   S  G
Sbjct:  309 GKLLPMAIQIQ-PPNPSSPAP----TLFLPSDPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGG 422          
The following BLAST results are available for this feature:
BLAST of DC900384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LX15B_HUMAN5.718e-1638.52Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX12L_MOUSE7.468e-1642.86Arachidonate 12-lipoxygenase, leukocyte-type OS=Mu... [more]
LX15B_RAT1.274e-1536.30Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX12_BOVIN1.274e-1540.34Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]
LX12E_MOUSE2.173e-1542.86Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]
LOX12_HUMAN2.173e-1540.34Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LOX5_MOUSE1.408e-1436.51Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOX12_PIG1.408e-1440.34Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX5_MESAU2.402e-1438.10Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX12_MOUSE3.138e-1441.18Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionDC900384 VSS Citrus sinensis cDNA clone VS28959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900384 ID=DC900384; Name=DC900384; organism=Citrus sinensis; type=EST; length=458bp
AAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTTTTC
TTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATCCCT
TCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATGGGC
ATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTCTGT
TCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGACTCA
TGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTTCAA
TGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTAGAA
ATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAATTGA
GGCTTCTTTCAGCCCGGAAGGTTGCCATGGAGCTAGCTTGAGCNCAAGTT
GAGTGCTG
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