DC900382

Overview
NameDC900382
Unique NameDC900382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PRP46_YEAST (Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae GN=PRP46 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 49/155 (31.61%), Postives = 67/155 (43.23%), Query Frame = 3
Query:  180 FVLSVAWSP-DGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +V  VA  P D      GS D T  V+D+   K    L GH M  R +  S   P  LFS S D  V   D E   +     GH   V +V   P    I T   D  +KLWD+  R  + ++  H   +  V   P+  +VVS S D ++ L++
Sbjct:  141 WVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHP-YLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWD 294          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 43/149 (28.86%), Postives = 72/149 (48.32%), Query Frame = 3
Query:   84 KLWDTATWNLIATLSIXRPEGLKPTDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRA 530
            K WD  T+ L+ T                   F+  +A +PDGR++  G++      +++  AK L  + G  +    +  SP + R + +A+ +  + I D       T + GH  WVLS+  SPDG  + +G+ D+TVK+WDL+  A
Sbjct:  214 KFWDANTFELLGT-------------SPQQPGFINGLAVTPDGRKLV-GAVRNFVKAWNLADAKELFSVRGPSLEINTIAVSP-NNRWVATANKEGTIMIFDLANGKQVTTLRGHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDLSALA 347          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 54/191 (28.27%), Postives = 81/191 (42.41%), Query Frame = 3
Query:   84 KLWDTATWNLIATLSIXRPEGLKPTDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKS------------LXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 620
            +LWD  T   I  L I              +  V ++A SP+ + IA GS+D    V+ V+    +  LEGH      + +SP D  +L S S D  + + + +                    +GH  +VLSV  SPD     +GS DR+++ WDL    +  +   H + V  V F P G +  S S D
Sbjct:  427 RLWDVETGQCILKLEI--------------ENGVTAIAISPNDQFIAVGSLDQIIRVWSVS-GTLVERLEGHKESVYSIAFSP-DSSILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQFASGSGD 601          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TBL3_MOUSE (Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 43/162 (26.54%), Postives = 76/162 (46.91%), Query Frame = 3
Query:  156 TDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            T +    K + S+A SP+ + +A GS D T  ++ + + + L    GH      + +SP D +VL +AS D  + +   +  S      GH   VL V     G+ + +  SD  +KLW +     ++++  H D+VWG+    L    ++   D  I L++
Sbjct:  473 TTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTD-QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWK 633          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 43/153 (28.10%), Postives = 69/153 (45.10%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            V  V  SP     A GS D T  ++   R   L    GH      + + P +   L + S D  V +  A+  +     +GH   VLS+  SP+G  + +   D+ +KLWDL      + +  HTD +  ++F P  G + S S D S+ +++
Sbjct:  387 VWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHP-NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWD 538          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLW 512
            K V SV +SP+G  +A G  D    ++D+   K L+ +  H      + Y P +   L +AS D  V+I      SL  +++GH   V S+D + D + I T S DRT+KLW
Sbjct:  424 KPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 38/120 (31.67%), Postives = 59/120 (49.17%), Query Frame = 3
Query:  282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            + L GH  P   +++ PV   V+ SAS D  + + D E       + GH   V  +     G  +T+ S+D T+KLWD      +++M  H   V  V+  P G  +VS S DK+I ++E
Sbjct:  102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWE 220          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 41/153 (26.80%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            V ++  S DGR IA  S D T  ++D +  + +  L GH        ++P   R L S S D  + I + + +     + GH   +L +     G  + + ++D  VK+W L+    + ++ NH D+VW ++ R  G  +VS   D  +S+++
Sbjct:  468 VNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFS-RQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWK 619          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 39/155 (25.16%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            K + S  +SP G+ +   S D T  ++++        L GH +    + +S  D R + SAS D  + I +     +   + GH  +V   + +P  + + +GS D +V++WD+     ++++  H+D V  VSF   G  + S S D  + +++
Sbjct:   88 KSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSS-DSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWD 241          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TBL3_HUMAN (Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 43/162 (26.54%), Postives = 77/162 (47.53%), Query Frame = 3
Query:  156 TDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            T +    K + SVA +P+ + +A GS D T  ++ + + + L    GH      + +SP+D +VL +AS D  + +   +  S      GH   VL V     G  + +  SD  VKLW +     ++++  H D+VWG+    L    ++ + D  + L++
Sbjct:  473 TTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWK 633          
The following BLAST results are available for this feature:
BLAST of DC900382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PRP46_YEAST2.591e-1131.61Pre-mRNA-splicing factor PRP46 OS=Saccharomyces ce... [more]
Y1491_SYNY33.384e-1128.86Uncharacterized WD repeat-containing protein sll14... [more]
TUP11_SCHPO3.384e-1128.27Transcriptional repressor tup11 OS=Schizosaccharom... [more]
TBL3_MOUSE3.384e-1126.54Transducin beta-like protein 3 OS=Mus musculus GN=... [more]
TAF5L_MOUSE3.384e-1128.10TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
PRP4_ARATH3.384e-1134.82U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
LIS1_MACFA3.384e-1131.67Platelet-activating factor acetylhydrolase IB subu... [more]
UTP13_SCHPO4.419e-1126.80Probable U3 small nucleolar RNA-associated protein... [more]
TG125_CAEEL4.419e-1125.16WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TBL3_HUMAN4.419e-1126.54Transducin beta-like protein 3 OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900382 VSS Citrus sinensis cDNA clone VS28955 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900382 ID=DC900382; Name=DC900382; organism=Citrus sinensis; type=EST; length=905bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCTCGTGCCGAATTCGGCACGAGGNAAAGCTCTGGGACACAGC
CACTTGGAATCTGATTGCCACCCTGTCAATTNCTCGNCCAGAAGGACTGA
AGCCGACAGATAAAAGNAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGG
AGTCCTGATGGCAGACGAATTGCTTGTGGNTCAATGGATGGCACAATNTC
TGTTTTTGATGTTACCCGCGCCAAATTCCTGCATNATCTGGAAGGCCATT
TCATGCCTGNGCGTNCTCTTGTTTATTCCCCTGTTGATCCACGTGTNCTC
TTCTCTGCATCANATGATACTCATGTGCACATTNATGATGCTGAGGGTAA
AAGTCTGGNTACGGCAATGTCTGGTCATGCTAGNTGGGTGTTGAGTGTTG
ATGCAAGCCCCGATGGAGCAGCTATTACAACAGGCTCAAGTGATAGAACT
GTAAAGCTCTGGGATCTTAACATGAGAGCAGCCATGCAGTCAATGACTAA
CCACACAGACCAGGTCTGGGGAGTGTCATTTAGACCACTAGGAGGTCGGG
TTGTTAGCGTATCAGATGACAAAAGCATATCACTCTATGAATACTCCTGA
TGATAAGGCATTTTCAAAGTAAGACTATTGCAAAGTTTTTGTTTGTTATT
TGAAAATGCTAATGCTATTGTTGTTCTTAACTGCATTGGTCTGAAATTGT
ATGCCNTTCCAACCTANATTAGTCTTCNGCNTANCNTGNTTTTTTGANCA
TTTTCATCATCTNAAAAAANCCGACATTTGGNGGACTGATGTCTAGTAGT
TGNGCNCAAGTAGTTGGCATGGTGGTAAAGTGNCTTCCCCCTTTGCTTTG
GATGC
back to top