Overview
Name DC900381 Unique Name DC900381 Type EST Organism Citrus sinensis (Sweet orange) Sequence length 656
Libraries
Library Name Type
VSS cdna_library
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900381 vs. ExPASy Swiss-Prot
Match:
UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)
HSP 1 Score: 76.2554 bits (186), Expect = 8.245e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 37 GRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRR 225
G VCISILHPP DDP EL SERW P V +I+LS+IS+L+ PN SPANV+A+ ++W++ +
Sbjct: 90 GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155 HSP 2 Score: 21.557 bits (44), Expect = 8.245e-14
Identity = 5/8 (62.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query: 6 EIWHPNVY 29
++WHPN+Y
Sbjct: 80 KMWHPNIY 87
BLAST of DC900381 vs. ExPASy Swiss-Prot
Match:
UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)
HSP 1 Score: 76.2554 bits (186), Expect = 8.245e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 37 GRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRR 225
G VCISILHPP DDP EL SERW P V +I+LS+IS+L+ PN SPANV+A+ ++W++ +
Sbjct: 90 GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155 HSP 2 Score: 21.557 bits (44), Expect = 8.245e-14
Identity = 5/8 (62.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query: 6 EIWHPNVY 29
++WHPN+Y
Sbjct: 80 KMWHPNIY 87
The following BLAST results are available for this feature:
BLAST of DC900381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 22
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 8.24e-14 / Id = 54.55 Expect = 8.24e-14 / Id = 54.55 Expect = 8.24e-14 / Id = 54.55 Expect = 8.24e-14 / Id = 54.55 Sequence UB2R1_MOUSE UB2R1_HUMAN
Match Name E-value Identity Description
UB2R1_MOUSE 8.245e-14 54.55 Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more] UB2R1_HUMAN 8.245e-14 54.55 Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
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Properties
Property Name Value
Genbank description DC900381 VSS Citrus sinensis cDNA clone VS28953 3, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>DC900381 ID=DC900381; Name=DC900381; organism=Citrus sinensis; type=EST; length=656bp back to top
