CX043814

Overview
NameCX043814
Unique NameCX043814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 127/172 (73.84%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 127/172 (73.84%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 127/172 (73.84%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 127/172 (73.84%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCA  MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D              A+  LPD+D+D
Sbjct:   43 GVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 127/172 (73.84%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.764e-70
Identity = 125/172 (72.67%), Postives = 139/172 (80.81%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPDED++
Sbjct:   44 GVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.929e-70
Identity = 126/172 (73.26%), Postives = 137/172 (79.65%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D               +  LPDEDDD
Sbjct:   44 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDD 215
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.132e-70
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D              +   LPDEDDD
Sbjct:   43 GVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.702e-70
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = -1 
Query:  352 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 867
            GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D              +   LPDEDDD
Sbjct:   43 GVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDD 214
The following BLAST results are available for this feature:
BLAST of CX043814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAN_MACFA1.350e-7073.84GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN1.350e-7073.84GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK1.350e-7073.84GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA1.350e-7073.84GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BRUMA1.350e-7075.00GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RAN_BOVIN1.350e-7073.84GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_DROME1.764e-7072.67GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAN_XENTR3.929e-7073.26GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_SALSA5.132e-7072.67GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU6.702e-7072.67GTP-binding nuclear protein Ran OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F01-L1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043814 ID=CX043814; Name=CX043814; organism=Citrus sinensis; type=EST; length=867bp
ACCGCGGCCCCCCCTTTTTTTTAAACTCAACTCAAGCCAGGTAAGCAGTA
AATTGAATCCTCAATTATCAACACAATATATAAATGAACTAGGATATGGG
GCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAA
CAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGAATTA
GGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAATCCA
AAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATATTGA
ACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCGAAGG
CGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCA
GCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGC
AAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTC
TGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAG
ATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGC
TTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACAATTG
GGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAACATTC
TTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATTGCCC
ATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCGGCAG
TGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTCCAAT
GGATGAACTTCCACACC
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