CX043814

Overview
NameCX043814
Unique NameCX043814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  427 GVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 867
            G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI  FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D
Sbjct:   41 GAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 191          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.583e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  499 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 807
            WDTAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  + R
Sbjct:   62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVR 171          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.047e-15
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  493 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 825
            KI++  WD+AGQ++F  L   YY     AI++FD+T + T+  V  W  +L   + E I +VLCGNK+D+ +NRQVK++    +  + N  Y E SAK N   E  FL + +KL
Sbjct:   57 KIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKL 170          
BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = -1
Query:  475 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 867
            GVE        N  +I+   WDTAGQEKF  +   YY    CA+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +   F  K  L ++E SAK+  N    FEK    + +KL  +P L
Sbjct:   58 GVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
The following BLAST results are available for this feature:
BLAST of CX043814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
GSP1_ENCCU1.670e-2846.36GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RAB7A_RABIT6.583e-1741.82Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
RAB7A_RAT8.597e-1741.82Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB8.597e-1741.82Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE8.597e-1741.82Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN8.597e-1741.82Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA8.597e-1741.82Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_BOVIN2.501e-1640.91Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RABJ_DICDI8.047e-1540.35Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RAB2B_DICDI1.793e-1436.69Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F01-L1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043814 ID=CX043814; Name=CX043814; organism=Citrus sinensis; type=EST; length=867bp
ACCGCGGCCCCCCCTTTTTTTTAAACTCAACTCAAGCCAGGTAAGCAGTA
AATTGAATCCTCAATTATCAACACAATATATAAATGAACTAGGATATGGG
GCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAA
CAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGAATTA
GGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAATCCA
AAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATATTGA
ACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCGAAGG
CGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCA
GCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGC
AAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTC
TGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAG
ATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGC
TTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACAATTG
GGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAACATTC
TTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATTGCCC
ATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCGGCAG
TGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTCCAAT
GGATGAACTTCCACACC
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