CX043799

Overview
NameCX043799
Unique NameCX043799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.570e-15
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  456 KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVE 647
            +++ YRGVR RPWGKFAAEIRD TR G RVWLGTF++           AF +RGS AILNFP+E
Sbjct:  133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  456 SSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVE 674
            SS  +    K+  +RGVRRRPWGKFAAEIRD +R+G R+WLGTF++           AF++RG  AILNFP E
Sbjct:    7 SSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = -3
Query:  456 EATPEATSEALVSSKRIKEEEVSSTTE--ENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVE 740
            E++  ++ E   SS   + ++     E  E     + YRGVRRRPWGKFAAEIRD  + G R+WLGTF+S           AF +RG  A+LNFP++
Sbjct:   73 ESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLD 169          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.959e-13
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = -3
Query:  420 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGS-SAILNFPVERVQESLKDMKCN 794
            L  +  D E   +   IA + P  T+   +++  I    +SS       K + YRGVR+RPWGKFAAEIRDSTR+G+RVWLGTF +           A  +RG+  A  NF +E V +++ +M CN
Sbjct:   61 LDMSTEDQEWTEILDAIA-SFPNKTNHDPLTNPTIDSCSLSSRVS---CKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLETVIKAM-EMDCN 181          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  444 SKRIKEEEVSSTTEENPTKEKS--YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQE 701
            S R K + VS + E +  +E+   YRG+R+RPWGK+AAEIRD ++ G+RVWLGTF +           A  +RG  A LNFP  +V+E
Sbjct:   26 SSRKKRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEE 112          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = -3
Query:  462 IAEATPEATSEALVSSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 746
            +++   E T + + SS  I ++  S T +E   +++++YRGVR+RPWGK+AAEIRD  +   RVWLGTFD+           AF  RG  A LNFP
Sbjct:   34 VSDFVSELTGQPIPSS--IDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  444 SSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQE 704
            S+K I + +  S + ++  T+ K +RGVR+RPWG++AAEIRD TR G RVWLGT+D+           A  ++G  A+ NFPV    E
Sbjct:   74 STKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  462 EATPEATSEALVSSKR--IKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 740
            ++ P  +S A V S    I+E    +  EE   K++ YRGVR+RPWGK+AAEIRD  R   RVWLGTFD+           A   RG+ A LNFP
Sbjct:   40 DSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  462 YGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 755
            +G  + +    T++  V  + +K+E+ +   +    K   YRG+R+RPWGK+AAEIRD  R G+RVWLGTF++           A  +RG  A LNFP
Sbjct:   40 WGFYSTSKLHPTNQVNVKEEAVKKEQATEPGKRRKRKNV-YRGIRKRPWGKWAAEIRD-PRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  411 ATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMKCNTEE 725
            A +E  V  K++   +  +    N  ++  YRG+R+RPWGK+AAEIRD  R G R+WLGTF +           A  +RGS A +NFP E       +MK N+++
Sbjct:   95 AAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRD-PREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE-------NMKANSQK 191          
The following BLAST results are available for this feature:
BLAST of CX043799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EF103_ARATH3.570e-1560.94Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF98_ARATH7.954e-1553.42Ethylene-responsive transcription factor ERF098 OS... [more]
EF106_ARATH2.314e-1442.27Ethylene-responsive transcription factor ERF106 OS... [more]
ERF91_ARATH1.959e-1339.68Ethylene-responsive transcription factor ERF091 OS... [more]
ERF71_ARATH2.829e-1245.45Ethylene-responsive transcription factor ERF071 OS... [more]
EF112_ARATH3.695e-1242.71Ethylene-responsive transcription factor ERF112 OS... [more]
PTI6_SOLLC8.231e-1243.18Pathogenesis-related genes transcriptional activat... [more]
EF110_ARATH1.075e-1145.26Ethylene-responsive transcription factor ERF110 OS... [more]
RAP23_ARATH1.404e-1138.78Ethylene-responsive transcription factor RAP2-3 OS... [more]
RA212_ARATH1.404e-1138.10Ethylene-responsive transcription factor RAP2-12 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E02-J3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043799 ID=CX043799; Name=CX043799; organism=Citrus sinensis; type=EST; length=865bp
CTTTAACTTCATATTAAATAAAAGAAACTAGATACACGAATCACCCCGAA
TTGCTTTCAAAAAATGGAAGCTTGTACAGGCATAAACCGTCTTTGGTTTA
CATATTGAAAAAGAAGATAACGACAATAACTAAATAAAAAAAGATAAAGG
GCAAGAAGATTAAGATAAGGCCAGAAAGTTACAAGTAGTTGACTTATTAT
CTAATTCACCAATTAGCGAGGTCTTGCTGTAGTAGTAGTAGTACTTTCAG
ATGAACTTAGCAGCTCTTCCAAGTAATCTGCTCCTAAATCTTCCAACACC
ACAAAATTTTCAATCCTCAAATTATCTCTCTCTTTATGCTTCTTATTATT
AGTCACCATTTTTCTTCTCATAGAATGTTTCCTCTTGAGTGCAACCACAG
GTGAGCATCCCTCCTCGGTGTTACACTTCATGTCTTTAAGTGATTCTTGA
ACCCTTTCAACAGGAAAATTGAGTATTGCTGAAGAGCCCCTCATTGAGAA
AGCAGCTTGATCGTAAGCCAAAGCAGCTGCTTCAGCACTATCGAATGTCC
CTAGCCAAACCCTAATCCCATGCCTAGTTGAATCCCTTATTTCTGCTGCA
AATTTCCCCCACGGCCGCCGTCGAACGCCTCTATATGACTTTTCCTTGGT
GGGGTTTTCCTCTGTTGTTGAACTCACCTCTTCTTCTTTAATTCTCTTGG
AGCTTACTAGTGCTTCTGATGTTGCTTCCGGTGTGGCTTCTGCTATTAGT
CCATAGAGAAGCATTTCTTCTGAGTCATTTTCATTGAATGGAAGATAATT
GTTATAAAAAGGGAAAGACTCCGGTGACCCGAAAGAGGATTCCGATGAGG
AAATTGAATTTGGAG
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