CX043799

Overview
NameCX043799
Unique NameCX043799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  432 KRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKD 698
            K+ +++ V +      T  + +RGVR+RPWGK+AAEIRD +R  +RVWLGTFD+           A  +RG +A LNFP   V E++++
Sbjct:   66 KKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEE 153          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = -3
Query:  351 VSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVT 707
            V S+      VS+TT    T EK +RGVR+RPWGK+AAEIRD  +  +R+WLGT+++           A  +RG  A+ NF V     + K          SPV   K+K++  +K VT
Sbjct:  100 VKSESTVSPVVSATT--TTTGEKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEK-----KAPPPSPVKKKKKKNNKSKKSVT 210          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  462 EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 716
            + L++   + +E  SS + E P   K YRGVR+RPWGK+AAEIRD  +   RVWLGTF++           A   RGS A LNFP
Sbjct:   37 QPLITGSAVTKECESSMSLERP---KKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 38/81 (46.91%), Postives = 44/81 (54.32%), Query Frame = -3
Query:  462 SSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 704
            SS   K+ E      +   K+  YRGVR+RPWGKFAAEIRD  R   RVWLGTF++           A   RG  A LNFP
Sbjct:  113 SSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
The following BLAST results are available for this feature:
BLAST of CX043799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CRF1_ARATH1.404e-1141.57Ethylene-responsive transcription factor CRF1 OS=A... [more]
CRF2_ARATH5.335e-1137.82Ethylene-responsive transcription factor CRF2 OS=A... [more]
RAP26_ARATH6.968e-1145.88Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF109_ARATH6.968e-1146.91Ethylene-responsive transcription factor ERF109 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E02-J3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043799 ID=CX043799; Name=CX043799; organism=Citrus sinensis; type=EST; length=865bp
CTTTAACTTCATATTAAATAAAAGAAACTAGATACACGAATCACCCCGAA
TTGCTTTCAAAAAATGGAAGCTTGTACAGGCATAAACCGTCTTTGGTTTA
CATATTGAAAAAGAAGATAACGACAATAACTAAATAAAAAAAGATAAAGG
GCAAGAAGATTAAGATAAGGCCAGAAAGTTACAAGTAGTTGACTTATTAT
CTAATTCACCAATTAGCGAGGTCTTGCTGTAGTAGTAGTAGTACTTTCAG
ATGAACTTAGCAGCTCTTCCAAGTAATCTGCTCCTAAATCTTCCAACACC
ACAAAATTTTCAATCCTCAAATTATCTCTCTCTTTATGCTTCTTATTATT
AGTCACCATTTTTCTTCTCATAGAATGTTTCCTCTTGAGTGCAACCACAG
GTGAGCATCCCTCCTCGGTGTTACACTTCATGTCTTTAAGTGATTCTTGA
ACCCTTTCAACAGGAAAATTGAGTATTGCTGAAGAGCCCCTCATTGAGAA
AGCAGCTTGATCGTAAGCCAAAGCAGCTGCTTCAGCACTATCGAATGTCC
CTAGCCAAACCCTAATCCCATGCCTAGTTGAATCCCTTATTTCTGCTGCA
AATTTCCCCCACGGCCGCCGTCGAACGCCTCTATATGACTTTTCCTTGGT
GGGGTTTTCCTCTGTTGTTGAACTCACCTCTTCTTCTTTAATTCTCTTGG
AGCTTACTAGTGCTTCTGATGTTGCTTCCGGTGTGGCTTCTGCTATTAGT
CCATAGAGAAGCATTTCTTCTGAGTCATTTTCATTGAATGGAAGATAATT
GTTATAAAAAGGGAAAGACTCCGGTGACCCGAAAGAGGATTCCGATGAGG
AAATTGAATTTGGAG
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