CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  E   GYNA TDK+ENM+ AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  447 APVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = -1
Query:  577 ASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 726
            A E + GYNA+TD YE+++QAGVIDP KVTR ALQNAAS+AG++LTT+A+
Sbjct:  472 AKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEAL 521          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  448 APVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP  LIA NA               +  GYNAM DK EN+L AGVIDPAKVTR  L N+ S+AG++LTTQA+
Sbjct:  484 APCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K S++  GYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  448 APLRQIADNAGEEGSVIVSRVKDSDFNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K  E+  GYNA + +Y +ML AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLKRIAENAGQNGAVISERVKEKEFNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP  +IA+NA           K +E + GYNA TD YE++++AGVIDP KV R ALQNA S+AG++LTT+A+
Sbjct:  447 APLRMIANNAGMEGSVVLDKVKNTEGSFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAM 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K S++  GYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  448 APLRQIADNAGAEGSVIVSRVKDSDFNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   + TGY+A  D + +M +AG++DPAKVTR ALQNAAS+AGMVLTT+AI
Sbjct:  449 APLRRIAENAGQNGSIVLERVKDKPFNTGYDAQNDAFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTEAI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           KASE   G++A  +KY NM++AG++DPAKVTR ALQNAASVA MVLTT+++
Sbjct:  449 PVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVDPAKVTRSALQNAASVASMVLTTESV 519          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH60_LACH41.119e-1252.7860 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_GEMAT1.461e-1268.0060 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_LACGA1.908e-1251.3960 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
RUBA_CHLRE2.492e-1252.78RuBisCO large subunit-binding protein subunit alph... [more]
CH602_ANASL2.492e-1252.7860 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH601_SYNY32.492e-1254.1760 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_DESAA3.255e-1251.3960 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH602_ANASP3.255e-1252.7860 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_SYNJB3.255e-1252.7860 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH60_CLOTH4.251e-1253.5260 kDa chaperonin OS=Clostridium thermocellum (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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