CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA+NA           K +E   GYNA+T  YE+M+ AG+IDPAKVTR A+QNAAS++ MVLTT+A+
Sbjct:  448 PLRQIANNAGIEGSVVVEKVKEAETGIGYNALTGVYESMIAAGIIDPAKVTRSAVQNAASISAMVLTTEAV 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACLA (60 kDa chaperonin OS=Lactococcus lactis subsp. lactis GN=groL PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           ++ E  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  447 PVRQIAANAGYEGSVIIDKLRSEEVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+  +  GYNA   +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGVNGAVVAENVKSKSFNEGYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           KA  +  GYNA    Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGVNGAVVAENVKAKSFNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP + IA+N+           ++++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+
Sbjct:  449 APLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   +  G+NA T+++ +M +AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLKRIAENAGQNGAVIAERVKEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K   +  G+NA T+++ +M +AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  449 APLKRIAENAGQNGAVIAERVKEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   I HNA           K  +   GYNA TD++ NM++AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  447 PVRQIVHNAGLEGSIIVERLKGEKVGIGYNAATDEWVNMVEAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           +  E+  G+NAMT++YE+++ AG+IDP KVTR ALQNAAS+A MVLTT+ I
Sbjct:  449 PLRQIAENAGLEGSVIAEKVRNLEFNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECI 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA            A     GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++LTT+A+
Sbjct:  451 APLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH60_SYNWW9.469e-1252.1160 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_LACLA1.237e-1149.3060 kDa chaperonin OS=Lactococcus lactis subsp. lac... [more]
CH602_SYNS31.237e-1151.3960 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SYNPW1.237e-1152.7860 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_TRIEI1.237e-1144.4460 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ANAVT1.237e-1150.0060 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP1.237e-1150.0060 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_OCEIH1.615e-1150.7060 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH601_GLOVI1.615e-1150.7060 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_CHLFF2.110e-1147.2260 kDa chaperonin OS=Chlamydophila felis (strain F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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