CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +   ++ G+NA +++Y +ML AG+IDPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLKRIAENAGANGSVVAENVRHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            +P   IA NA           K+     GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 SPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K+   + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 APLMRIAENAGANGAVVAENVKSRAISEGYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            +P   IA NA           K+     GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  449 SPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           K SE  TG+NA T ++ NM++AG+IDP KVTR ALQNAASVA ++LTT+A+
Sbjct:  447 PVRQIALNAGFEGSIVIDRLKNSEVGTGFNAATGEWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           K SE  TG+NA T ++ NM++AG+IDP KVTR ALQNAASVA ++LTT+A+
Sbjct:  447 PVRQIALNAGFEGSIVIDRLKNSEVGTGFNAATGEWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_STRGN (60 kDa chaperonin OS=Streptococcus gordonii GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           K SE  TG+NA T ++ NM++AG+IDP KVTR ALQNAASVA ++LTT+A+
Sbjct:  447 PVRQIALNAGFEGSIVIDRLKNSEAGTGFNAATGEWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K +E   G+NA TD++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  446 APVRQIAENAGLEGSVIVERLKNAEPGVGFNAATDEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_METHJ (60 kDa chaperonin OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  577 ASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 726
            ASE T GYNA TD YE++LQAGV+DP KV R  LQNAAS+AGM+L+T+A+
Sbjct:  471 ASE-TYGYNAKTDTYEDLLQAGVLDPTKVVRSGLQNAASIAGMLLSTEAV 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACLS (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  577 PASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 789
            P   IA NA           ++ +  TG+NA T ++ NM++ G++DPAKVTR ALQNAASVAG++LTT+A+
Sbjct:  447 PVRQIAANAGYEGSVIIDKLRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CH60_SYNR32.755e-1150.0060 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH602_PROM12.755e-1151.3960 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_SYNPX2.755e-1152.7860 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_PROMT2.755e-1151.3960 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_STRSV3.598e-1152.1160 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]
CH60_STRSA3.598e-1152.1160 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_STRGN3.598e-1152.1160 kDa chaperonin OS=Streptococcus gordonii GN=gro... [more]
CH60_STAAB3.598e-1151.3960 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_METHJ3.598e-1168.0060 kDa chaperonin OS=Methanospirillum hungatei (st... [more]
CH60_LACLS3.598e-1147.8960 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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