DC900364

Overview
NameDC900364
Unique NameDC900364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1050
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.476e-13
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+ST KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.846e-13
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETR 353
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR       A+ +KE R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESRTNSDIVEALNKKEHR 94          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.846e-13
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETR 353
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR       A+ +KE R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESRTNSDIVEALNKKEHR 94          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.846e-13
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETR 353
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR       A+ +KE R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESRTNSDIVEALNKKEHR 94          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.302e-12
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERM 524
            MGR KI I RI +   RQVTF+KR+ G++KK +ELSVLCD +I LIIFSS+ KL QY +    M++++   LK T     E++   +      ++ KE +   +S                 D  E E + ++    + K   + ++  N+ ++ +M
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD--MDRVL---LKYT-----EYNEPHESLTNKNIIEKENKNGVMSP----------------DSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQM 131          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.302e-12
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.302e-12
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.302e-12
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.302e-12
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
BLAST of DC900364 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.221e-12
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   54 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 308
            MGR KI I+RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+ + KL QY +    M++++   LK T    P H+SR
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVL---LKYTEYNEP-HESR 79          
The following BLAST results are available for this feature:
BLAST of DC900364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN4.476e-1352.94Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_RAT5.846e-1348.00Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_HUMAN5.846e-1348.00Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN5.846e-1348.00Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2_DROME1.302e-1231.85Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2A_XENLA1.302e-1251.76Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB1.302e-1251.76Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.302e-1251.76Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.302e-1251.76Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2D_XENLA2.221e-1250.59Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionDC900364 VSS Citrus sinensis cDNA clone VS28932 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900364 ID=DC900364; Name=DC900364; organism=Citrus sinensis; type=EST; length=1050bp
CGGCACGAGTTACAAGCAAAGCAAGAGAAAGCGAACAAGAAAAGATCAGA
ATAATGGGACGTGGGAAGATAGCGATCAAGAGGATTGAGAACCCGACGAC
GAGGCAAGTAACCTTCTCGAAACGGAGAGCTGGGCTTTTGAAGAAGACCC
ATGAACTCTCAGTGCTTTGTGATGCTCAAATTGGCCTCATCATCTTCTCA
AGTACCGGAAAATTGTGCCAGTACTGCACTGAGCCTTTCAGAATGGAGCA
AATCATTGAGAGGCGCCTCAAAGTTACAGGGACTCGCATCCCTGAGCATG
ATAGCCGGGAACAAATATTCAATGAGTTGGCGGTTCTGAGAAAAGAAACC
CGCCGCCTTCAGCTGAGTATGCGACGCTACACTGGTGAGGACTTGGGTTC
TATACCTTATGATGATCTCGATCAACTTGAACATGAGCTTGAAAGCTCTG
TTAACAAGGTCCGAGATCGCAAGAATGAGCTTCTTCAACAACAGCTGGAT
AATCTTCGTAGGAAGGAGCGAATGCTGGAGGAAGAGAACAGCAACATGTA
CCGTTGGATTCAGGAGCATAGGGCAGCATTGGAGTATCAGCAAGCTGCAA
TGGAAGCAAAGCCAGCTGAGGAGCATCATCATCAAGTCTTGGATCATTTT
CCATTCTTGGGAGATCAACAACCCAGTAGTGTGCTTCAGCTTGCAACCAA
CAGTATCCCTCATCAAATTCACCCTTATCACCATCTTCAGCTTGCTCAGC
CCAACCTTCAGGATCCCAATGTCTAGTATCAGCTTAAGAAGGATGTCCGA
AAGAGGTTGCGAAAGAGTAGATGATATAATCATTATGAAGATGACTCATA
ATTATCTCCTGGTTATTAATTACCTTATATAGTTTGCAGTAATTAAATTA
TTATTTTATGTTTTAGAAGCTACGAATGATCTGCTCGCTATGTGTGTTCC
TCATATTTATAACTCTTTGTATATGTATTGAGATATGTGACTTCAAACAA
TTGTACTGTGGTATGTTTTAGACATGAAAAAGTACTTGAATTTCTGCCGT
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