DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTM_STRPU (Actin, muscle OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.654e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ED+  LV DNG+GM K GFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAI+AV
Sbjct:    4 EDVAALVVDNGSGMCKTGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIKAV 140
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.654e-70
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 3 
Query:   69 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 458
            MAD +DIQPLVCDNGTGMVKAGFAGDD+PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT KYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct:    1 MADVDDIQPLVCDNGTGMVKAGFAGDDSPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTWKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_SUIBO (Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.654e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPA YVAIQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_SACKO (Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.654e-70
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRA+FPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAIFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 140
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_SALSA (Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_CYPCA (Actin, cytoplasmic 1 OS=Cyprinus carpio GN=actb PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_CTEID (Actin, cytoplasmic 1 OS=Ctenopharyngodon idella GN=actb PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_BOSMU (Actin, cytoplasmic 1 OS=Bos mutus grunniens GN=ACTB PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.160e-70
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP+ANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPEANREKMTQIMFETFNTPAMYVAIQAV 139
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACTM_STRPU1.654e-7091.97Actin, muscle OS=Strongylocentrotus purpuratus PE=... [more]
ACT7_SOLTU1.654e-7096.15Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT1_SUIBO1.654e-7091.97Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1[more]
ACT1_SACKO1.654e-7091.24Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACTG_TRISC2.160e-7091.97Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ... [more]
ACTB_SALSA2.160e-7091.97Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 S... [more]
ACTB_OREMO2.160e-7091.97Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN... [more]
ACTB_CYPCA2.160e-7091.97Actin, cytoplasmic 1 OS=Cyprinus carpio GN=actb PE... [more]
ACTB_CTEID2.160e-7091.97Actin, cytoplasmic 1 OS=Ctenopharyngodon idella GN... [more]
ACTB_BOSMU2.160e-7091.97Actin, cytoplasmic 1 OS=Bos mutus grunniens GN=ACT... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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