DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_EXODE (Actin OS=Exophiala dermatitidis PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 118/137 (86.13%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_BOTFU (Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 118/137 (86.13%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 118/137 (86.13%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 118/137 (86.13%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTG_CEPAC (Actin, gamma OS=Cephalosporium acremonium GN=ACT PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.640e-68
Identity = 118/137 (86.13%), Postives = 131/137 (95.62%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.503e-68
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 3 
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETFN PA YV+IQAV
Sbjct:    4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.503e-68
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 3 
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETFN PA YV+IQAV
Sbjct:    4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.503e-68
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 3 
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETFN PA YV+IQAV
Sbjct:    4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_NAEFO (Actin-1 OS=Naegleria fowleri PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 5.881e-68
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +D+Q LV DNG+GM KAGFAGDDAPRAVFPSI+GRP+   +MVGMG KDAYVGDE QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF+ PAMYVAIQAV
Sbjct:    3 DDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIIGRPKQKSIMVGMGNKDAYVGDEVQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAV 139
[Close]
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 7.681e-68
Identity = 117/137 (85.40%), Postives = 130/137 (94.89%), Query Frame = 3 
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAP+NPK NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPINPKFNREKMTQIVFETFNAPAFYVSIQAV 139
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACT_EXODE2.640e-6886.13Actin OS=Exophiala dermatitidis PE=3 SV=1[more]
ACT_BOTFU2.640e-6886.13Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1[more]
ACT_AJECG2.640e-6886.13Actin OS=Ajellomyces capsulata (strain ATCC 26029 ... [more]
ACTG_EMENI2.640e-6886.13Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S... [more]
ACTG_CEPAC2.640e-6886.13Actin, gamma OS=Cephalosporium acremonium GN=ACT P... [more]
ACT_YEAST4.503e-6887.50Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=... [more]
ACT_SACBA4.503e-6887.50Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1[more]
ACT_CANGA4.503e-6887.50Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1[more]
ACT1_NAEFO5.881e-6887.59Actin-1 OS=Naegleria fowleri PE=2 SV=2[more]
ACTG_PENCH7.681e-6885.40Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
back to top