DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.003e-67
Identity = 120/132 (90.91%), Postives = 127/132 (96.21%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI FETFNAPA YV+IQAV
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIFFETFNAPAFYVSIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.003e-67
Identity = 116/137 (84.67%), Postives = 131/137 (95.62%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+M+GMGQKD+YVGDEAQSKRG+L+L+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQI+FETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGVLSLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_CRYNV (Actin OS=Cryptococcus neoformans var. grubii PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.003e-67
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPE+ PVLLTEAPLNPK NREKMTQIMFE+FNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEDDPVLLTEAPLNPKQNREKMTQIMFESFNAPAFYVSIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_ECHGR (Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.003e-67
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+I PLV DNG+GM KAGFAGDD+PRAVFPS+VGRPR   +MVGMG KD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN  AMYVAIQAV
Sbjct:    3 EEITPLVVDNGSGMCKAGFAGDDSPRAVFPSLVGRPRQQSIMVGMGNKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVRAMYVAIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: FGR_FSVGR (Tyrosine-protein kinase transforming protein Fgr OS=Feline sarcoma virus (strain Gardner-Rasheed) GN=V-FGR PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.235e-67
Identity = 120/133 (90.23%), Postives = 126/133 (94.74%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVA 479
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN P+ YVA
Sbjct:   25 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNIPSNYVA 157          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_KLULA (Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.235e-67
Identity = 118/136 (86.76%), Postives = 128/136 (94.12%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK NREKMTQI+FETFN PA YV+IQAV
Sbjct:    4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKNNREKMTQILFETFNVPAFYVSIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_TOXGO (Actin OS=Toxoplasma gondii GN=ACT1 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.919e-67
Identity = 122/141 (86.52%), Postives = 132/141 (93.62%), Query Frame = 3
Query:   69 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            MAD E++Q LV DNG+G VKAG AGDDAPRAVFPSIVG+P++ G+MVGM +KD YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE+MTQIMFETFN PAMYVAIQAV
Sbjct:    1 MAD-EEVQALVVDNGSGNVKAGVAGDDAPRAVFPSIVGKPKNPGIMVGMEEKDCYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVAIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTM_STYPL (Actin, muscle OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.919e-67
Identity = 120/137 (87.59%), Postives = 127/137 (92.70%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+   LVCDNG+G+VKAGF GD  PRAVFP  VGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWD+MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    7 EEQTALVCDNGSGLVKAGFPGDAPPRAVFPLTVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDNMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_TRIRE (Actin OS=Trichoderma reesei GN=act PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.979e-67
Identity = 117/137 (85.40%), Postives = 129/137 (94.16%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++  LV DNG+GM KAGFAGDDAPRAVFPSI GR RH G+M+GMGQKD+YVGDEAQSKRGILTL+YPIEHG+V+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETFNAPA YV+IQAV
Sbjct:    3 EEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIDGRSRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIMFETFNAPAFYVSIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTBL_MOUSE (Beta-actin-like protein 2 OS=Mus musculus GN=Actbl2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 8.492e-67
Identity = 117/137 (85.40%), Postives = 127/137 (92.70%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +++  LV DNG+GM KAGF GDDAPRAVFPS+VGRPRH GVMVGMGQKD YVGDEAQSKRGILTLKYPIEHG+V+NWDDMEKIW+HTFYNELRVAP+EHP+LLTEAPLNPK NREKMTQIMFE FN PAMYVAIQAV
Sbjct:    4 DELTALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAV 140          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACT_YARLI1.003e-6790.91Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]
ACT_THELA1.003e-6784.67Actin OS=Thermomyces lanuginosus PE=3 SV=1[more]
ACT_CRYNV1.003e-6788.32Actin OS=Cryptococcus neoformans var. grubii PE=3 ... [more]
ACT1_ECHGR1.003e-6788.32Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV... [more]
FGR_FSVGR2.235e-6790.23Tyrosine-protein kinase transforming protein Fgr O... [more]
ACT_KLULA2.235e-6786.76Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2[more]
ACT_TOXGO2.919e-6786.52Actin OS=Toxoplasma gondii GN=ACT1 PE=3 SV=1[more]
ACTM_STYPL2.919e-6787.59Actin, muscle OS=Styela plicata PE=3 SV=1[more]
ACT_TRIRE4.979e-6785.40Actin OS=Trichoderma reesei GN=act PE=3 SV=1[more]
ACTBL_MOUSE8.492e-6785.40Beta-actin-like protein 2 OS=Mus musculus GN=Actbl... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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