DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.092e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAY+GDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYIGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPWLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 121          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT4_SOLTU (Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.092e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL+LKYPIEHGIVSNWDDMEKIWHHTFYNELRV PEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILSLKYPIEHGIVSNWDDMEKIWHHTFYNELRVVPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 121          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: POTEE_HUMAN (POTE ankyrin domain family member E OS=Homo sapiens GN=POTEE PE=1 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 2.732e-65
Identity = 117/137 (85.40%), Postives = 126/137 (91.97%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +D   LV DNG+GM KAGFAGDDAPRAVFPSIVGRPR  G+M GM QK++YVG EAQSKRGILTLKYP+EHGI++NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:  703 DDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 839          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_ENCCU (Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 2.732e-65
Identity = 116/137 (84.67%), Postives = 128/137 (93.43%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E +Q LV D G+G+VK+GFAGDDAPRAVFPSIVG P+H GVMVGMGQKDAYVGDEAQ+KRGIL +KYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK+TQIMFETFN P+ Y++IQAV
Sbjct:    3 EIVQALVIDIGSGVVKSGFAGDDAPRAVFPSIVGFPKHKGVMVGMGQKDAYVGDEAQTKRGILHIKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKITQIMFETFNVPSFYISIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT3_TOBAC (Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.732e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF+ PAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIASNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAV 121          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_PLAYO (Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 3.568e-65
Identity = 115/137 (83.94%), Postives = 128/137 (93.43%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E++Q LV DNG+G VKAG AGDDAPR+VFPSIVGRP++ G+MVGM +KDA+VGDEAQ+KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELR APEEHPVLLTEAPLNPK NRE+MTQIMFE+FN PAMYVAIQAV
Sbjct:    4 EEVQALVIDNGSGNVKAGVAGDDAPRSVFPSIVGRPKNPGIMVGMEEKDAFVGDEAQTKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPEEHPVLLTEAPLNPKGNRERMTQIMFESFNVPAMYVAIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_TOBAC (Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.086e-65
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVGRPR+TGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT+IMFETFN PAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGRPRYTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPLLLTEAPLNPKANREKMTEIMFETFNVPAMYVAIQAV 121          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_SOLTU (Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.086e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEE PVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGRPRHAGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEERPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 121          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTB_CERPY (Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus GN=ACTB PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 7.949e-65
Identity = 118/124 (95.16%), Postives = 119/124 (95.97%), Query Frame = 3
Query:  120 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            M KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN EKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 MCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVYNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANLEKMTQIMFETFNTPAMYVAIQAV 124          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.038e-64
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 3
Query:  129 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            AGFAGDDAPRAVFPSIVG PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA EEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 AGFAGDDAPRAVFPSIVGHPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAHEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 121          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACT4_TOBAC2.092e-6597.52Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT4_SOLTU2.092e-6597.52Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
POTEE_HUMAN2.732e-6585.40POTE ankyrin domain family member E OS=Homo sapien... [more]
ACT_ENCCU2.732e-6584.67Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE... [more]
ACT3_TOBAC2.732e-6597.52Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_PLAYO3.568e-6583.94Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=... [more]
ACT2_TOBAC6.086e-6596.69Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT2_SOLTU6.086e-6597.52Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACTB_CERPY7.949e-6595.16Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus ... [more]
ACT6_TOBAC1.038e-6497.52Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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