DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_PLABA (Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB001050.02.0 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.313e-59
Identity = 106/137 (77.37%), Postives = 122/137 (89.05%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+   LV DNG+GMVK+G AGDDAP+ VFPSI+G P+   +MVGM QK+ YVGDEAQ+KRGILTLKYPIEHGIV+NWDDMEKIW HTF+NELRV+PEEHPVLLTEAPLNPK NREKMTQIMFE+F+ PAMYV+IQA+
Sbjct:    3 EESIALVVDNGSGMVKSGLAGDDAPKCVFPSIIGIPKMPNIMVGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDMEKIWRHTFFNELRVSPEEHPVLLTEAPLNPKTNREKMTQIMFESFDVPAMYVSIQAI 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT17_DICDI (Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.240e-59
Identity = 107/135 (79.26%), Postives = 121/135 (89.63%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            D+Q LV DNG+ + KAGFAGDDAPRAVFPSIVGR R+  VMVGMGQKD+YVGDEAQSKRGIL LKYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP+ LT +P + KANREKMTQIMFETF+ PAMY++IQ+
Sbjct:    5 DVQALVIDNGSSISKAGFAGDDAPRAVFPSIVGRQRYRDVMVGMGQKDSYVGDEAQSKRGILNLKYPIERGIITNWDDMEKIWHHTFYNELRVAPEEHPIHLTLSPSSSKANREKMTQIMFETFSNPAMYISIQS 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTX_TAKRU (Actin, alpha anomalous OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.990e-59
Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   LVCDNG+G+VKAGFAGDD PRAVF +IVGRPRH   M  MG+K  YVGDEAQSKR IL+LK+PIE GI++NWDDMEKIWHHTFYNEL VAPEEHP LLTEAPLNPKANREKMTQIM ETFN PAMYV+IQAV
Sbjct:    5 DETALVCDNGSGLVKAGFAGDDTPRAVFHAIVGRPRHQDDMDDMGKKGYYVGDEAQSKRDILSLKHPIERGIITNWDDMEKIWHHTFYNELCVAPEEHPTLLTEAPLNPKANREKMTQIMLETFNMPAMYVSIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.235e-58
Identity = 103/137 (75.18%), Postives = 117/137 (85.40%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+   +VCDNG+GMVK+GF+GDDAPR VFPSIVGRP++   M+G   K  +VGDEAQ+KRG+L LKYPIEHGIV+NWDDMEK+WHHTFYNELRV PE H VLLTEAP+NPK NREKMTQIMFETF  PAMYV IQAV
Sbjct:    4 EEQTAIVCDNGSGMVKSGFSGDDAPRHVFPSIVGRPKNEQAMMGSANKKLFVGDEAQAKRGVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPESHNVLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_TETTH (Actin, macronuclear OS=Tetrahymena thermophila PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.097e-57
Identity = 105/141 (74.47%), Postives = 119/141 (84.40%), Query Frame = 3
Query:   69 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            MA+ E    +V DNG+GM KAG AGDDAPRA FPSIVGRP+  G+MVGM QK+ YVG+EAQ+KRG+L LKYPIEHGIV+++DDMEKIWHH FYNELRV PEEHP LLTEAP NPK NREKMT+ MFETFN P+ YVAIQAV
Sbjct:    1 MAESES-PAIVIDNGSGMCKAGIAGDDAPRAAFPSIVGRPKMPGIMVGMDQKECYVGEEAQAKRGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYVAIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_TETPY (Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   +V DNG+GM KAG AGDDAPRA FPSI+GRP+  G+MVGM QK+ YVG+EAQ+KRG+L LKYPIEHGIV+++DDMEKIWHH FYNELRV PEEHP LLTEAP NPK NREKMT+ MFETFN P+ YVAIQAV
Sbjct:    5 DSPAIVIDNGSGMCKAGIAGDDAPRAAFPSIIGRPKMPGIMVGMDQKECYVGEEAQAKRGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYVAIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_TRYBB (Actin B OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.671e-57
Identity = 100/137 (72.99%), Postives = 118/137 (86.13%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+   +VCDNG+GMVK+GF+GDDAPR +FPSIVG P++   M+G  +++ +VGDEAQ+KRG+L LKYPIEHGIV+NWDDMEK+WHHTFYNELRV PE H VLLTEAP+NPK NREKMTQIMFETF  PAMYV IQAV
Sbjct:    4 EEQTAIVCDNGSGMVKSGFSGDDAPRHLFPSIVGPPKNEQAMMGSAKQEMFVGDEAQAKRGVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPESHNVLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.027e-56
Identity = 101/137 (73.72%), Postives = 116/137 (84.67%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            E+   +VCDNG+GMVKAGF+GDDA   VFPSIVGRP++   M+G   K  +VGDEAQ+KRG+L+LKYPIEHGIV+NWDDMEKIWHHTFYN++RV PE H VLLTEAP+NPK NREKMTQIMFETF  PAMYV IQAV
Sbjct:    4 EEQSAIVCDNGSGMVKAGFSGDDALCHVFPSIVGRPKNEQAMMGSASKKLFVGDEAQAKRGVLSLKYPIEHGIVTNWDDMEKIWHHTFYNDVRVNPESHSVLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT1_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.027e-56
Identity = 100/136 (73.53%), Postives = 116/136 (85.29%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D Q  V DNG+G+VKAGFAG+DAPRAVFPSIVGRP++   ++G+     Y+GDEAQ KRG+L + YPIEHGIV +WDDMEKIW+HTFY ELRV P+EHP+LLTEAPLNPK NREKMTQIMFETFN PA+YVAIQAV
Sbjct:    3 DQQTCVIDNGSGVVKAGFAGEDAPRAVFPSIVGRPKNVSALIGVDSASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVQPDEHPILLTEAPLNPKTNREKMTQIMFETFNVPALYVAIQAV 138          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT2_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.809e-56
Identity = 99/136 (72.79%), Postives = 115/136 (84.56%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D Q  V DNG+G+VKAGFAG+DAPRAVFPSIVGRP++   ++G+     Y+GDEAQ KRG+L + YPIEHGIV +WDDMEKIW+HTFY ELRV P+EHP+LLTEAPLNPK NREKMTQIMFETFN PA+YV IQAV
Sbjct:    3 DQQTCVIDNGSGVVKAGFAGEDAPRAVFPSIVGRPKNVSALIGVDSASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVQPDEHPILLTEAPLNPKTNREKMTQIMFETFNVPALYVVIQAV 138          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACT2_PLABA1.313e-5977.37Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT17_DICDI2.240e-5979.26Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3... [more]
ACTX_TAKRU4.990e-5980.15Actin, alpha anomalous OS=Takifugu rubripes PE=2 S... [more]
ACT1_TRYBB3.235e-5875.18Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT1_TETTH2.097e-5774.47Actin, macronuclear OS=Tetrahymena thermophila PE=... [more]
ACT2_TETPY2.738e-5775.00Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 ... [more]
ACT2_TRYBB4.671e-5772.99Actin B OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_TRYCR3.027e-5673.72Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACT1_OXYTR3.027e-5673.53Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]
ACT2_OXYTR8.809e-5672.79Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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