DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29
Identity = 58/133 (43.61%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   93 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            P+V DNG+GM+KAG AG   P+ ++P+I+GR +        G  +  VGD+AQ  R  L + YP+E G++++W+DME +W H +   L++ P + PVL+TE  LNP ANR+++T++ FE    PA Y++IQAV
Sbjct:    7 PVVIDNGSGMIKAGVAGCREPQFIYPNIIGRAKGQS-RAAQGGLELCVGDQAQDWRSSLFISYPVERGLITSWEDMEIMWKHIYDYNLKLKPCDGPVLITEPALNPLANRQQITEMFFEHLGVPAFYMSIQAV 138          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_CALFI (Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.199e-28
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 3
Query:  309 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            WDDMEKIWHHTFYNELRVAPEE PVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 WDDMEKIWHHTFYNELRVAPEELPVLLTEAPLNPKANREKMTQIMFETFNMPAMYVAIQAV 61          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G  KAG +G+  PR +  SIVG  +         QK  +VG+EA  K+  L L  P E G+++ WDD+E++W H F  EL V P + P+L TE  LNP+ NREKM ++MFE F  PA Y++ QAV
Sbjct:    8 DSPAVIFDNGSGFCKAGLSGEFGPRHMVSSIVGHLKFQAPSAEANQKKYFVGEEALYKQEALQLHSPFERGLITGWDDVERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEVMFENFGVPAFYLSDQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.015e-27
Identity = 57/134 (42.54%), Postives = 89/134 (66.42%), Query Frame = 3
Query:   93 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            P+V DNG+GM+KAG AG   P+ V+P+I+GR + HT       +++  VGD+AQ +R  L++ YP+E G++S+W DME +W H +   L +   + PVL+TE  LNP A+R+ ++++ FE    PA Y++ QAV
Sbjct:    7 PVVIDNGSGMIKAGLAGTREPQFVYPNILGRSKGHTAD----SRQELCVGDQAQERRSFLSISYPVERGLISSWGDMEIMWKHIYDYNLNLNASDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMSAQAV 136          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   93 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAV
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV 162          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   69 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQK------DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            M     +  +V DNGTG  K G+AG++ P  + P+ +      G      QK      D ++GDEA +      +  P++HG + NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFN P +Y+A+QAV
Sbjct:    1 MNPASGLPAVVIDNGTGYTKMGYAGNNDPSFIIPTTIATQSSKGKQTAASQKKGVEDLDFFIGDEAIANSKTYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENREFTAEIMFETFNVPGLYIAVQAV 147          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D+  ++ DNG+G+ KAG +G+  PR V  S++G  +       + Q   +VG EA  K   L L YPI+ G+V+ WDDMEK+W H F  EL V P + PVL+TE  LNP+  REK+ ++MFE F+ P  Y++  AV
Sbjct:    8 DVPAVIFDNGSGLCKAGVSGEIGPRHVINSVLGHRKFNMPSARLNQY--FVGQEALYKFDALHLHYPIKRGLVTGWDDMEKLWKHLFEWELGVKPSQQPVLMTEPSLNPREIREKLAEMMFENFSVPGFYLSNHAV 141          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 62/144 (43.06%), Postives = 80/144 (55.56%), Query Frame = 3
Query:   99 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            V DNGTG  K G+AG+  P+ + PS +                   V  G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAV
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 153          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7A_MACFA (Actin-like protein 7A OS=Macaca fascicularis GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            E  + +V D GTG  K GFAG   P     ++VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FE FN PAM++A Q+
Sbjct:   67 EVTKAVVVDLGTGYCKCGFAGLPRPTHKISTMVGKPYMETAKTGDNRKETFVGQELNNTNVHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFEAFNTPAMHIAYQS 202          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_CRAVI (Actin (Fragment) OS=Crassostrea virginica PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 3
Query:  324 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAV
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAV 56          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ARPM1_HUMAN9.179e-2943.61Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ACT_CALFI1.199e-2896.72Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1[more]
ACTT2_HUMAN1.566e-2844.12Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ARPM1_MOUSE1.015e-2742.54Actin-related protein M1 homolog OS=Mus musculus G... [more]
ARP3_SCHPO2.953e-2740.76Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3_DICDI6.578e-2739.46Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ACTT1_MACFA8.591e-2743.38Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ARP3_CAEEL1.465e-2643.06Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ACL7A_MACFA1.465e-2640.44Actin-like protein 7A OS=Macaca fascicularis GN=AC... [more]
ACT_CRAVI2.500e-2698.21Actin (Fragment) OS=Crassostrea virginica PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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