DC900346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 7.667e-39 Identity = 108/310 (34.84%), Postives = 153/310 (49.35%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---------------QSGYSEA-----GVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT V P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS S Y+ A +AFPQ + G + PG +G +LV+NLN D I LF L +YG++ R+K++ NK ++AL QM D QA++A + L G Sbjct: 82 INYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSG 388
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 2.914e-38 Identity = 107/310 (34.52%), Postives = 150/310 (48.39%), Query Frame = 2 Query: 8 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---------------QSGYSEA-----GVAFPQM-------------XXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKG 748 + +YT + P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS S Y+ A + FPQ G PG +G +LV+NLN D I LF L +YG++ R+K++ NK ++AL QM D QA+LA + L G Sbjct: 111 VNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSG 417
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24 Identity = 79/246 (32.11%), Postives = 123/246 (50.00%), Query Frame = 2 Query: 38 IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLL-RNKPDHALXQMGDGXQAELAXHFLKG 748 IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L + +S +L + + + RSRD+TNP LP Q + G + + G + ++ L+ N+ + D L + S YG + +I + +N AL Q D A +A L+G Sbjct: 83 IRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ---TAMDGSMQPAL----------------GADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEG 304 HSP 2 Score: 90.5077 bits (223), Expect = 1.273e-17 Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 2 Query: 119 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQSGYSEAGVAFPQ 493 + + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+A +A+ +L+G IYD G C+L + +S +L V +++SRD+T P+L QKG AG PQ Sbjct: 239 ESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQ 366
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: HNRLL_MOUSE (Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus GN=Hnrpll PE=1 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24 Identity = 80/265 (30.19%), Postives = 131/265 (49.43%), Query Frame = 2 Query: 14 FYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP----QMXXXXXXXXXFGGGLPPGIT-----GTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELA 730 F +V I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L V N+ S D+T P L +G+ Q GY G P LP + G+ V+VS L+ +++ ++FNL LYGNI ++K ++ P AL +MGD E A Sbjct: 179 FAADVPVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERA 437
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: HNRPL_MOUSE (Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24 Identity = 82/295 (27.80%), Postives = 137/295 (46.44%), Query Frame = 2 Query: 2 NALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-----------------------PAEQKGRPS--QSGYSEAGVAFPQMXXXXXXXXXFGGG-------------------LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKGXY 754 NA+ + + Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V N++ + D+TNPNL PAE G S Y + G P GG PP D ++V L+ +++ D++FN+ LYGN+ ++K +++KP A+ +M DG + A L + Sbjct: 149 NAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNF 440
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: HNRPL_HUMAN (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24 Identity = 82/295 (27.80%), Postives = 137/295 (46.44%), Query Frame = 2 Query: 2 NALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-----------------------PAEQKGRPS--QSGYSEAGVAFPQMXXXXXXXXXFGGG-------------------LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELAXHFLKGXY 754 NA+ + + Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V N++ + D+TNPNL PAE G S Y + G P GG PP D ++V L+ +++ D++FN+ LYGN+ ++K +++KP A+ +M DG + A L + Sbjct: 152 NAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNF 443
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: HNRLL_HUMAN (Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens GN=HNRPLL PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24 Identity = 78/257 (30.35%), Postives = 127/257 (49.42%), Query Frame = 2 Query: 38 IRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP----QMXXXXXXXXXFGGGLPPGIT-----GTNDRCTVLVSNLNSDRIDEDKLFNLXSLYGNIIRIKLLRNKPDHALXQMGDGXQAELA 730 I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L V N+ S D+T P L +G+ Q GY G P LP + G V+VS L+ +++ ++FNL LYGNI ++K ++ P AL +MGD E A Sbjct: 138 IAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERA 388
BLAST of DC900346 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21 Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 110 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 469 G+ EP + +LL +I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY +AVVA+ +L+G IYD G C+L I +S +L + NN+RSRD+T PN P +P Q+ Y+ Sbjct: 236 GKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQNPYA 357 HSP 2 Score: 98.2117 bits (243), Expect = 6.104e-20 Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 2 Query: 38 IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 430 +RG+ VY+Q+S+ QE+ + A D +LLVTI ++++VLH VFS GFV KI TF+K+AG+QAL+Q+ +A A+ +L GR+I G C L I +S +L V + + RSRD+TNP LP Sbjct: 84 VRGKTVYLQYSNRQEIVNNKTTA----DVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLP 218 The following BLAST results are available for this feature:
BLAST of DC900346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900346 ID=DC900346; Name=DC900346; organism=Citrus sinensis; type=EST; length=848bpback to top |