DC900345

Overview
NameDC900345
Unique NameDC900345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2A_RAT (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Rattus norvegicus GN=Camk2a PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   DLW+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT AE +++ W
Sbjct:  191 GKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2A_PONAB (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Pongo abelii GN=CAMK2A PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   DLW+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT AE +++ W
Sbjct:  191 GKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2A_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Mus musculus GN=Camk2a PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   DLW+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT AE +++ W
Sbjct:  191 GKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2A_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Homo sapiens GN=CAMK2A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   DLW+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT AE +++ W
Sbjct:  191 GKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KC2D1_DANRE (Calcium/calmodulin-dependent protein kinase type II delta 1 chain OS=Danio rerio GN=camk2d1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT AE +++ W
Sbjct:  191 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITAAEALKHPW 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: CDPKD_ARATH (Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.099e-11
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA--DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDV 309
            G + D+WS GVILY+L+ G  PF   +   + + I +   DFK  PW   S +AK L+ ++L+P+P  R+T  +V+E+ W +   K      PN+ L DV
Sbjct:  232 GPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGVIDFKREPWPNISETAKNLVRQMLEPDPKRRLTAKQVLEHPWIQNAKK-----APNVPLGDV 326          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: STK6_PIG (Serine/threonine-protein kinase 6 OS=Sus scrofa GN=AURKA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.742e-11
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   28 KADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPS 276
            K DLWS GV+ Y  + G  PFE +     YK+I + +F  P +    A+ LISR+L  NP  R T+ EV+E+ W     KP S
Sbjct:  309 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVPEGARDLISRLLKHNPSHRPTLKEVLEHPWITANSKPAS 391          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: STK6L_XENLA (Serine/threonine-protein kinase Eg2-like OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.742e-11
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   28 KADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPP 273
            K DLWS GV+ Y  + G  PFE       Y++I K +F+ PP+ S  AK L+S++L  NP  R+ +  V+E+ W  K  + P
Sbjct:  316 KVDLWSLGVLCYEFLVGKPPFETDTHQETYRRISKVEFQYPPYVSEEAKDLVSKLLKHNPNHRLPLKGVLEHPWIVKNSQQP 397          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: CDPK7_ARATH (Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.742e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA--DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPS 276
            G + D+WS GVILY+L+ G  PF       + + I ++  DFK  PW   S SAK L+ ++L+P+P  R+T A+V+E+ W     K P+
Sbjct:  237 GPEIDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPRVSDSAKDLVRKMLEPDPKKRLTAAQVLEHTWILNAKKAPN 325          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SRK2J_ARATH (Serine/threonine-protein kinase SRK2J OS=Arabidopsis thaliana GN=SRK2J PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.581e-11
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   16 YDGAKADLWSCGVILYVLMAGYLPFEE----SNLMALYKKIFKADFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQP 288
            YDG   D+WSCGV LYV++ G  PFE+     N     +KI   ++K P +   S   +KL+SRI   NP+ R T+ E+  + WF K   P   ++P
Sbjct:  176 YDGKSVDVWSCGVALYVMLVGAYPFEDPKDPRNFRKTVQKIMAVNYKIPGYVHISEDCRKLLSRIFVANPLHRSTLKEIKSHAWFLKNL-PRELKEP 271          
The following BLAST results are available for this feature:
BLAST of DC900345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
KCC2A_RAT2.099e-1146.91Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_PONAB2.099e-1146.91Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_MOUSE2.099e-1146.91Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_HUMAN2.099e-1146.91Calcium/calmodulin-dependent protein kinase type I... [more]
KC2D1_DANRE2.099e-1145.68Calcium/calmodulin-dependent protein kinase type I... [more]
CDPKD_ARATH2.099e-1137.00Calcium-dependent protein kinase 13 OS=Arabidopsis... [more]
STK6_PIG2.742e-1140.96Serine/threonine-protein kinase 6 OS=Sus scrofa GN... [more]
STK6L_XENLA2.742e-1139.02Serine/threonine-protein kinase Eg2-like OS=Xenopu... [more]
CDPK7_ARATH2.742e-1139.33Calcium-dependent protein kinase 7 OS=Arabidopsis ... [more]
SRK2J_ARATH3.581e-1138.14Serine/threonine-protein kinase SRK2J OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionDC900345 VSS Citrus sinensis cDNA clone VS28902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900345 ID=DC900345; Name=DC900345; organism=Citrus sinensis; type=EST; length=1136bp
ATTAATAATAAAGGCTACGATGGAGCTAAGGCAGATCTCTGGTCTTGCGG
TGTGATTCTTTATGTCTTAATGGCTGGTTACTTGCCTTTTGAAGAATCCA
ATCTGATGGCTTTATATAAGAAGATATTTAAGGCTGACTTCAAGAGTCCT
CCATGGTTCTCGACAAGTGCAAAGAAACTGATCTCAAGAATTTTGGACCC
TAATCCTGTGACACGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGT
TTAAGAAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTT
GATGATGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGT
TGTGGAGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCGT
TTGAGTTGATCTCCACATCTCAGGGACTCAACCTCAGTTCCCTTTTCGAA
AAGCAAATGGGACTTGTGAAACGAGAAACAAGATTTACATCCAAACGTCC
TGTTAACGAAATTATATCGAAAATTGAGGAAGCTGCATCGCCTTTGGGTT
TTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGGAAAAAACT
GGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCC
TTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATACCTTAGAAT
TTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATGTTGTTTGG
AAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCTGGTGGCGC
AGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTGAATATCTC
CAGCAAATTATATATTGCTTTTGCACCATTGTATCTCAGCTTTGTATTTT
ATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAACTCACTTCTC
GTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAGATGTATCAT
CTCAACGGATATTGAACATAGTCAATTACCTGCAAATTATCAAAAAGAGT
CTCAGTCCACTGTCGTTTTCATTTTGTTTGTTTTTAGTGACTTGTCTATG
GACCAGAAAATTCAATAAAAAGAATATATTGTAAAA
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