DC900345

Overview
NameDC900345
Unique NameDC900345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_RAT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Rattus norvegicus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_RABIT (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Oryctolagus cuniculus GN=CAMK2D PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_PIG (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Sus scrofa GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Mus musculus GN=Camk2d PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Homo sapiens GN=CAMK2D PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_CHICK (Calcium/calmodulin-dependent protein kinase type II delta chain OS=Gallus gallus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KCC2D_BOVIN (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Bos taurus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKA---DFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEW 249
            G   D+W+CGVILY+L+ GY PF + +   LY++I KA   DF SP W   +  AK LI+++L  NP  RIT +E +++ W
Sbjct:  192 GKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI-KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPW 271          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: CDPKA_ARATH (Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana GN=CPK10 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.677e-11
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   22 GAKADLWSCGVILYVLMAGYLPF----EESNLMALYKKIFKADFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDV 309
            G   D+WS GVI+Y+L+ G  PF    E+   +A+ + +   DFK  PW   S SAK L+ ++LDP+P  R+T  +V+ + W +   K      PN+ L D+
Sbjct:  241 GPGVDVWSAGVIIYILLCGVPPFWAETEQGVALAILRGVL--DFKRDPWPQISESAKSLVKQMLDPDPTKRLTAQQVLAHPWIQNAKK-----APNVPLGDI 335          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: TRIB1_HUMAN (Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    1 INNKG-YDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDLDDVDSIFNESMD 336
            +N  G Y G  AD+WS GV+LY L+ G  PF +S+  AL+ KI +  F  P   S  A+ LI  +L   P  R+T  E++ + WF+   +P   +      D +   + E  D
Sbjct:  254 LNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEPGYIDSEIGTSDQIVPEYQEDSD 366          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SRK2F_ARATH (Serine/threonine-protein kinase SRK2F OS=Arabidopsis thaliana GN=SRK2F PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.108e-11
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEE----SNLMALYKKIFKADFKSPPW--FSTSAKKLISRILDPNPVTRITMAEVIENEWFKKG--YKPPSFEQPNIDLDDVDSIFNESMDSRNLVVERREE 369
            ++ K Y+G  AD+WSCGV LYV++ G  PFE+     N+    ++I    +  P +   S+  K L+SRI   +P  RIT+ E+ ++ WF KG    PP  E+ +  +++ +    +   S   +V+  EE
Sbjct:  171 LSRKEYNGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNIRNTIQRILSVHYTIPDYVRISSECKHLLSRIFVADPDKRITVPEIEKHPWFLKGPLVVPPEEEKCDNGVEEEEEEEEKCRQSVEEIVKIIEE 301          
The following BLAST results are available for this feature:
BLAST of DC900345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
KCC2D_RAT4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_RABIT4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_PIG4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_MOUSE4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_HUMAN4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_CHICK4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2D_BOVIN4.677e-1144.44Calcium/calmodulin-dependent protein kinase type I... [more]
CDPKA_ARATH4.677e-1136.27Calcium-dependent protein kinase 10 OS=Arabidopsis... [more]
TRIB1_HUMAN6.108e-1133.63Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 S... [more]
SRK2F_ARATH6.108e-1132.06Serine/threonine-protein kinase SRK2F OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionDC900345 VSS Citrus sinensis cDNA clone VS28902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900345 ID=DC900345; Name=DC900345; organism=Citrus sinensis; type=EST; length=1136bp
ATTAATAATAAAGGCTACGATGGAGCTAAGGCAGATCTCTGGTCTTGCGG
TGTGATTCTTTATGTCTTAATGGCTGGTTACTTGCCTTTTGAAGAATCCA
ATCTGATGGCTTTATATAAGAAGATATTTAAGGCTGACTTCAAGAGTCCT
CCATGGTTCTCGACAAGTGCAAAGAAACTGATCTCAAGAATTTTGGACCC
TAATCCTGTGACACGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGT
TTAAGAAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTT
GATGATGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGT
TGTGGAGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCGT
TTGAGTTGATCTCCACATCTCAGGGACTCAACCTCAGTTCCCTTTTCGAA
AAGCAAATGGGACTTGTGAAACGAGAAACAAGATTTACATCCAAACGTCC
TGTTAACGAAATTATATCGAAAATTGAGGAAGCTGCATCGCCTTTGGGTT
TTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGGAAAAAACT
GGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCC
TTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATACCTTAGAAT
TTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATGTTGTTTGG
AAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCTGGTGGCGC
AGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTGAATATCTC
CAGCAAATTATATATTGCTTTTGCACCATTGTATCTCAGCTTTGTATTTT
ATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAACTCACTTCTC
GTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAGATGTATCAT
CTCAACGGATATTGAACATAGTCAATTACCTGCAAATTATCAAAAAGAGT
CTCAGTCCACTGTCGTTTTCATTTTGTTTGTTTTTAGTGACTTGTCTATG
GACCAGAAAATTCAATAAAAAGAATATATTGTAAAA
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