DC900345

Overview
NameDC900345
Unique NameDC900345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1136
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5659 contig Csv1_Contig5659:1..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: RKIN1_SECCE (Carbon catabolite-derepressing protein kinase OS=Secale cereale GN=RKIN1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.315e-13
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFK 255
            I+ K Y G + D+WSCGVILY L+ G +PF++ N+  L+KKI    +  P + S   + LISR+L  +P+ RIT+ E+ ++ WF+
Sbjct:  186 ISGKLYAGPEIDVWSCGVILYALLCGAVPFDDDNIPNLFKKIKGGTYILPIYLSDLVRDLISRMLIVDPMKRITIGEIRKHSWFQ 270          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: MARK1_HUMAN (Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.315e-13
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   10 KGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPS---FEQPNIDLDDVDSI 318
            K YDG + D+WS GVILY L++G LPF+  NL  L +++ +  ++ P + ST  + L+ ++L  NP+ R ++ +++++ W   G++      + +P+ D +D   I
Sbjct:  231 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKLLVLNPIKRGSLEQIMKDRWMNVGHEEEELKPYTEPDPDFNDTKRI 336          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: BRSK2_MOUSE (BR serine/threonine-protein kinase 2 OS=Mus musculus GN=Brsk2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.717e-13
Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQP---------NIDLDDVDSIFNESMDSRNLVVERRE 366
            I  + YDG KAD+WSCGVIL+ L+ G LPF++ NL  L +K+ +  F  P +     + L+  +++ +   R+T+  + ++ W+  G   P  EQP            L+D+D    +SM S     +R +
Sbjct:  188 IRGEKYDGRKADVWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVDAARRLTLEHIQKHIWYIGGKNEPEPEQPIPRKVQIRSLPSLEDIDPDVLDSMHSLGCFRDRNK 318          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: BRSK2_HUMAN (BR serine/threonine-protein kinase 2 OS=Homo sapiens GN=BRSK2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.717e-13
Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQP---------NIDLDDVDSIFNESMDSRNLVVERRE 366
            I  + YDG KAD+WSCGVIL+ L+ G LPF++ NL  L +K+ +  F  P +     + L+  +++ +   R+T+  + ++ W+  G   P  EQP            L+D+D    +SM S     +R +
Sbjct:  187 IRGEKYDGRKADVWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVDAARRLTLEHIQKHIWYIGGKNEPEPEQPIPRKVQIRSLPSLEDIDPDVLDSMHSLGCFRDRNK 317          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.243e-13
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWF 252
            IN K Y G + D+WSCG++LYV++ G LPF++  +  L+KK+    +  P + S  A+ LI R++  +P+ RIT+ E+  + WF
Sbjct:  202 INGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWF 285          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: KIN2_YEAST (Serine/threonine-protein kinase KIN2 OS=Saccharomyces cerevisiae GN=KIN2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 2.243e-13
Identity = 47/169 (27.81%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   16 YDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGY--KPPSFEQPNIDL--DDVDS----------IFNESMDSRNLVVERREEGPVAPLTMNAFELISTSQGLNLSSLFEKQMGLVKRET 480
            Y G + D+WS G++LYVL+ G +PF++ N   L++KI K     P   S     L++R++  +P+ R T+  V+E+ W  +GY  K PS+    + L  + +DS            ++  D+R  ++    E     L+   ++ +S ++GL+ SSL    +    ++T
Sbjct:  299 YTGPEVDIWSFGIVLYVLVCGKVPFDDENSSILHEKIKKGKVDYPSHLSIEVISLLTRMIVVDPLRRATLKNVVEHPWMNRGYDFKAPSYVPNRVPLTPEMIDSQVLKEMYRLEFIDDIEDTRRSLIRLVTEKEYIQLSQEYWDKLSNAKGLS-SSLNNNYLNSTAQQT 466          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: PAR1_CAEBR (Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae GN=par-1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.929e-13
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    4 NNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYK----PPSFEQPNIDLDD 306
            + K YDG + D+WS GVILY L++G LPF+  NL  L +++ +  ++ P + ST  + L+ + L  NP  R ++  ++++ W   GY+     P  E P   +D+
Sbjct:  297 SGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLVINPQRRSSLDNIMKDRWMNVGYEDDELKPFIEPPKDQIDE 401          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK1_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Caenorhabditis elegans GN=aak-1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.826e-13
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFK---KGYKPPSFEQPN--IDLDDVDSI 318
            I+NK Y G + DLWSCGVILY ++ G LPF++ N+  L+ KI    +  P      A  LIS +L  +PV R  +  ++ + WF+     Y  P  E  +  +D+D V S+
Sbjct:  193 ISNKLYVGPEVDLWSCGVILYAMLCGTLPFDDQNVPTLFAKIKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVKRIVNHSWFRIDLPYYLFPECENESSIVDIDVVQSV 303          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: CDR2_SCHPO (Mitosis inducer protein kinase cdr2 OS=Schizosaccharomyces pombe GN=cdr2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.997e-13
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGYKPPSFEQPNIDL 300
            I  + YDG  +D+WSCG+I + L+ G LPF++ N+ +L  K+ +  F+ P   S  A+ L+ R+LD +  TRITM ++ E+ +         F  PNI +
Sbjct:  179 IMGRSYDGCASDIWSCGIIFFALLTGKLPFDDDNIRSLLLKVCQGQFEMPSNISPQAQHLLYRMLDVDSSTRITMEQIREHPFLS------CFVHPNISI 272          
BLAST of DC900345 vs. ExPASy Swiss-Prot
Match: AAPK1_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Rattus norvegicus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.997e-13
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 INNKGYDGAKADLWSCGVILYVLMAGYLPFEESNLMALYKKIFKADFKSPPWFSTSAKKLISRILDPNPVTRITMAEVIENEWFKKGY------KPPSFEQPNID 297
            I+ + Y G + D+WS GVILY L+ G LPF++ ++  L+KKI    F +P + + S   L+  +L  +P+ R T+ ++ E+EWFK+        + PS+    ID
Sbjct:  196 ISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMID 300          
The following BLAST results are available for this feature:
BLAST of DC900345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
RKIN1_SECCE1.315e-1342.35Carbon catabolite-derepressing protein kinase OS=S... [more]
MARK1_HUMAN1.315e-1332.08Serine/threonine-protein kinase MARK1 OS=Homo sapi... [more]
BRSK2_MOUSE1.717e-1331.30BR serine/threonine-protein kinase 2 OS=Mus muscul... [more]
BRSK2_HUMAN1.717e-1331.30BR serine/threonine-protein kinase 2 OS=Homo sapie... [more]
SNF1_SCHPO2.243e-1339.29SNF1-like protein kinase ssp2 OS=Schizosaccharomyc... [more]
KIN2_YEAST2.243e-1327.81Serine/threonine-protein kinase KIN2 OS=Saccharomy... [more]
PAR1_CAEBR2.929e-1333.33Serine/threonine-protein kinase par-1 OS=Caenorhab... [more]
AAPK1_CAEEL3.826e-1336.945'-AMP-activated protein kinase catalytic subunit ... [more]
CDR2_SCHPO4.997e-1336.00Mitosis inducer protein kinase cdr2 OS=Schizosacch... [more]
AAPK1_RAT4.997e-1335.245'-AMP-activated protein kinase catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionDC900345 VSS Citrus sinensis cDNA clone VS28902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900345 ID=DC900345; Name=DC900345; organism=Citrus sinensis; type=EST; length=1136bp
ATTAATAATAAAGGCTACGATGGAGCTAAGGCAGATCTCTGGTCTTGCGG
TGTGATTCTTTATGTCTTAATGGCTGGTTACTTGCCTTTTGAAGAATCCA
ATCTGATGGCTTTATATAAGAAGATATTTAAGGCTGACTTCAAGAGTCCT
CCATGGTTCTCGACAAGTGCAAAGAAACTGATCTCAAGAATTTTGGACCC
TAATCCTGTGACACGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGT
TTAAGAAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTT
GATGATGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGT
TGTGGAGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCGT
TTGAGTTGATCTCCACATCTCAGGGACTCAACCTCAGTTCCCTTTTCGAA
AAGCAAATGGGACTTGTGAAACGAGAAACAAGATTTACATCCAAACGTCC
TGTTAACGAAATTATATCGAAAATTGAGGAAGCTGCATCGCCTTTGGGTT
TTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGGAAAAAACT
GGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCC
TTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATACCTTAGAAT
TTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATGTTGTTTGG
AAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCTGGTGGCGC
AGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTGAATATCTC
CAGCAAATTATATATTGCTTTTGCACCATTGTATCTCAGCTTTGTATTTT
ATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAACTCACTTCTC
GTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAGATGTATCAT
CTCAACGGATATTGAACATAGTCAATTACCTGCAAATTATCAAAAAGAGT
CTCAGTCCACTGTCGTTTTCATTTTGTTTGTTTTTAGTGACTTGTCTATG
GACCAGAAAATTCAATAAAAAGAATATATTGTAAAA
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