DC900342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 8.627e-59 Identity = 120/272 (44.12%), Postives = 171/272 (62.87%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 876 V GQD A++++ EAI+ +RAGL H+P+ SF+F GPTGVGKTE+ L+ + L+R DMSEYME+H VSRLIGAPPGYVG+++GG LT+ V + P+AV+L DEIEKAH DVFN+ LQ++D+G +TD+ GR F N V++MT+N G + + E ++ M+ + IF PEF NR+D I F L D I +V + +Q ++ + + ++V+ A L GYD GARP+ RVIQ ++ LA +L G Sbjct: 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR-----ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFG 723
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 8.627e-59 Identity = 120/272 (44.12%), Postives = 171/272 (62.87%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRG 876 V GQD A++++ EAI+ +RAGL H+P+ SF+F GPTGVGKTE+ L+ + L+R DMSEYME+H VSRLIGAPPGYVG+++GG LT+ V + P+AV+L DEIEKAH DVFN+ LQ++D+G +TD+ GR F N V++MT+N G + + E ++ M+ + IF PEF NR+D I F L D I +V + +Q ++ + + ++V+ A L GYD GARP+ RVIQ ++ LA +L G Sbjct: 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR-----ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFG 723
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 4.734e-57 Identity = 119/274 (43.43%), Postives = 175/274 (63.87%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM--DDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI-ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILR 873 V+GQ A+ ++E I +RAG++DP +P+ FM +GP+GVGKTE A A+A M+ E+ L+ I+MSEY E H VS L G+PPGYVGY EGG LTE VRR+PY+V+L DEIEKAHSDV +F Q+ D G++ D +GR + F NT++++TSNVGS+ + N+ D +T P + + I + +F F+ RV I + PL + + IVRL LDR+ +R+ + ++ +Q +D + + S GAR + R I+Q + E+ K ILR Sbjct: 591 VIGQPHALVQLSENIMTARAGMADPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNLITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLFADPDTAPDQ---DGILSALQPELLKVFPAAFLGRV-TVIPYLPLQQSALQHIVRLHLDRIGQRLQSQHQLTLQYSDVVVDDVVSRCSVAETGARMLIRYIEQNITPEIGKFILR 860
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 4.899e-54 Identity = 111/273 (40.66%), Postives = 170/273 (62.27%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM--DDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRI-ADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 ++GQD A++ +A+ IQ SRAGL +P +PI FM G +GVGKTE A ALA M+ E+ ++ I+MSE+ E H VS L GAPPGY+GY EGG LTE VRR+PY+V+L DE+EKAH DV +F Q+ D G + D +GR + F NT+I++T+N G++ I ++ D E P+ E I + + + IF P + R+ I + PL D + +I RLQL R++KR+ A K+ + + + L+ S + G R + ++ + ++++ L Sbjct: 605 IIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPELMPEP---EAIAKSLREPLLKIFPPALLGRL-VTIPYYPLSDDMLKAISRLQLGRIKKRVEATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTLLPDMSREFL 873
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 8.948e-48 Identity = 106/290 (36.55%), Postives = 168/290 (57.93%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS----QYILNMDDETF-----------------PKETAYETIKQRVMDAARLIF--RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELA 858 ++GQ+ A+ +V AI+R G D P+ F+F+G +G+GKTELAK A YM + ++ +R+DMSE+ E+H V++ IG+PPGYVG+EEGGQLT+ +++ P AV+LFDE++KAH DV + LQ+ D+GR+TD +G+T+ + + IMTSNV S Q+ L + E K T + K+ V+ R EF+ R++E + F P ++ +V +L+ KR R + D + + GY+ +YGAR +K +++ V N+LA Sbjct: 347 IIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLA 635
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 8.948e-48 Identity = 105/290 (36.21%), Postives = 168/290 (57.93%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS----QYILNMDDETF-----------------PKETAYETIKQRVMDAARLIF--RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELA 858 ++GQ+ A+ +V AI+R G D P+ F+F+G +G+GKTELAK A YM + ++ +R+DMSE+ E+H V++ IG+PPGY+G+EEGGQLT+ +++ P AV+LFDE++KAH DV + LQ+ D+GR+TD +G+T+ + + IMTSNV S Q+ L + E K T + K+ V+ R EF+ R++E + F P ++ +V +L+ KR R + D + + GY+ +YGAR +K +++ V N+LA Sbjct: 317 IIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVEGYNVHYGARSIKHEVERRVVNQLA 605
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.169e-47 Identity = 105/290 (36.21%), Postives = 168/290 (57.93%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS----QYILNMDDETF-----------------PKETAYETIKQRVMDAARLIF--RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELA 858 ++GQ+ A+ +V AI+R G D P+ F+F+G +G+GKTELAK A YM + ++ +R+DMSE+ E+H V++ IG+PPGY+G+EEGGQLT+ +++ P AV+LFDE++KAH DV + LQ+ D+GR+TD +G+T+ + + IMTSNV S Q+ L + E K T + K+ V+ R EF+ R++E + F P ++ +V +L+ KR R + D + + GY+ +YGAR +K +++ V N+LA Sbjct: 317 IIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQMSDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLA 605
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 3.400e-47 Identity = 104/290 (35.86%), Postives = 167/290 (57.59%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS----QYILNMDDETF-----------------PKETAYETIKQRVMDAARLIF--RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELA 858 ++GQ+ A+ +V AI+R G D P+ F+F+G +G+GKTELAK A YM + ++ +R+DMSE+ E+H V++ IG+PPGY+G+EEGGQLT+ +++ P AV+LFDE++KAH DV + LQ+ D+GR+TD +G+T+ + + IMTSNV S Q+ L + E K T + K+ ++ R EF+ R++E + F P ++ +V +L+ KR R + D + + GY+ YGAR +K +++ V N+LA Sbjct: 317 IIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISDKITISKNFKENMIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVQYGARSIKHEVERRVVNQLA 605
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: AMIB_PSEAE (ATP-dependent protease ATP-binding subunit-like protein amiB OS=Pseudomonas aeruginosa GN=amiB PE=3 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 3.183e-45 Identity = 102/285 (35.79%), Postives = 171/285 (60.00%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG-RTVSFTNTVIIMTSNVGSQYILNMDD--ETFPKETAYETIKQRVMD-----AARLI--FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 V+GQDPA+++V + ++ RA ++DP RP+ S +F+GPTGVGKTE+ +ALA + E R+DM+ ++H + L GAPPGYVG +EG L E + RP ++LFDE+EKA +V + L +LD+G + + G RT F NT++ MTSN+ + I D+ + P ++R D ARL+ F PEF+NR+D + F ++RD ++ +V L++ R+ +R+ + +++ T + + G+D +GAR ++R ++ ++E LA+ +L Sbjct: 61 VLGQDPALQAVEDMLKVVRADIADPRRPLFSALFLGPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAAALTGAPPGYVGAKEGTTLLEQDKLDGSPGRP-GIVLFDELEKASPEVVHALLNVLDNGLLRVASGERTYHFRNTLVFMTSNLCAHEIQRYDERRQRLPWRLLPVGGERRRRDIDGMVRARLLKTFSPEFVNRLDSVVTFNWIERDVVARLVELEVQRLNRRLEKHRCRLEATPEVLAKIARAGFDRQFGARALRRSVRHHLEVPLAEHLL 344
BLAST of DC900342 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 1.478e-42 Identity = 98/284 (34.51%), Postives = 158/284 (55.63%), Query Frame = 1 Query: 61 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTE--VVRRRPY--AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG-RTVSFTNTVIIMTSNVGSQYILN---------MDDETFPKETAYETIKQRVMDAARLIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGIL 870 +VGQ AV +V AI + G +DP RP+A+ + +GPTGVGKTEL + +A+ + + + L RIDM+ ++H + GAPPGY G +E L + V PY ++LFDE+EKA V LQ+LD+G + + G + +SF N+ + +TSN+GS + D + + QR ++ F PEF NR+DE ++ D + RL+++ + R+A R + ++V D+A+ LL G+DP YGAR ++R I+ + + +A +L Sbjct: 44 IVGQQAAVDAVVRAISIAHVGATDPTRPLANILLVGPTGVGKTELVRRVAAELRSGPDDLCRIDMNALAQEHYAASFSGAPPGYAGSKESFTLFDKNTVEGDPYTPGIVLFDEVEKADPTVLRALLQVLDNGELRLANGQQKISFRNSYVFLTSNLGSAAVAERRRSHLRQLADRVRIDRPRHGHHLVQRALEK---FFDPEFFNRIDETVILDEFDDQTAEQVTRLEIELITTRLARRGIDVEVDDSAVALLQRRGFDPVYGARGLRRTIRNVLADPVAGAVL 324 The following BLAST results are available for this feature:
BLAST of DC900342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900342 ID=DC900342; Name=DC900342; organism=Citrus sinensis; type=EST; length=1211bpback to top |