CX043724

Overview
NameCX043724
Unique NameCX043724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 48/147 (32.65%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  251 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE-KVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCG 688
            R+IP  FL+ VK+ F S YG  K  TA A G+N +F   L+ LM +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L+QQ+  F+    +++  MW +N+                  +S C GF  G
Sbjct:   72 RRIPFTFLDDVKNRFKSMYGD-KGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGFRSG 216          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = -3
Query:  263 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 688
            R+IP +FLE +   FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR    +    +W +N                      CHG
Sbjct:   73 RRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = -3
Query:  248 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 688
            R    +FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   72 RSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGFTWPNCVK 219          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = -3
Query:  335 FLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 670
            FL  +K  F + YG  +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   78 FLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  338 QIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 685
            QIP  FL  ++ +F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK+W QN
Sbjct:   75 QIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  248 FLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 670
            FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   78 FLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGFTWPNCVK 219          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 42/118 (35.59%), Postives = 70/118 (59.32%), Query Frame = -3
Query:  335 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 688
            R     FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   72 RSRAFGFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  335 FLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 670
            FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   78 FLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  335 FLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 670
            FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   78 FLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:  641 NKFILDALQKSHRYL-AKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRFQ 787
            +K I + ++  +R+L AKLFHDKESMHPLLEFLRVHC+KGKNMMLNDR Q
Sbjct:  150 SKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCYKGKNMMLNDRIQ 199          
The following BLAST results are available for this feature:
BLAST of CX043724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VAM7B_DICDI3.641e-1632.65Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH2.360e-1531.69Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE1.171e-1432.67Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.171e-1439.47Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAM7A_DICDI1.530e-1438.79Vesicle-associated membrane protein 7A OS=Dictyost... [more]
VAMP7_BOVIN2.609e-1432.64Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_RAT4.451e-1435.59Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_PONAB5.813e-1436.61Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN5.813e-1436.61Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
SUSY_ALNGL1.432e-1272.00Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A08-B15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043724 ID=CX043724; Name=CX043724; organism=Citrus sinensis; type=EST; length=789bp
ATTTTAGTTATGGCCGGTATAATCAGCAGCAGCATCTTTGCACAAGCATT
CTCACAATATAATGACGGGACTCATTCACAAGCAAAAATAAGTTTTCGGT
TTTCTTTGTAACAAATATAGGGAAACTGCTAACTTTTTTAGACTAAATAC
AAAGTCAAGATCATATATATTTATATATCTCTTTCACAATATCATCACAG
AAGCTCTTAGAAGAGCGTAATATAAGCCTCCTGGAGAATAGCACTCATTT
TCCGCAGTTGAAACCATGGCAAACAGAGAGGACTATGATGAGGATCAAGG
CAATCAGTATTCCCAAAACAATCAGCTTGATCTTCATATTTTGCAGCCAC
ATTTTCCTCCGCATTTTGGTCCCCGTACTCCGAAAGTCTTGTGCCTGCTG
ATGAAGGTTCTCAGTCTTATCGACCAGTAGCTCAATCTTTTCCCCCCTAT
CTAAAACCTTTTCAATATTCTCCATCATAACACCTTTGACTTCTGAAACC
TGAGCCTTAACCTTCGCAAGCTTGCTGATCTCCTCAGGATGATCAACACA
GTACTGCATAAGTTCTTTCAATTTTGGTCCAAATTCCTTGTTCAGGCCAT
TGGCAGGAGCCGTGGCAGCCTTTCCACCCCCATATTTGGAAACAAATTCA
TCCTTGACGCGCTCCAGAAAAGCCATCGGTATTTGGCGAAGCTCTTCCAT
GACAAGGAGAGCATGCATCCACTGCTTGAATTTCTCCGCGTCCACTGCCA
CAAGGGCAAAAACATGATGCTGAATGACAGATTTCAGAA
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