DC900340 | Citrus Genome Database

Overview


Name	DC900340
Unique Name	DC900340
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	803

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.071e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

HSP 2 Score: 54.6842 bits (130), Expect = 1.071e-56
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD+ V G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFR 37

BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.822e-56
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 3

Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            AL TGEKG G       YKGSSFHR+IPGFMCQ             SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   38 ALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164

HSP 2 Score: 53.5286 bits (127), Expect = 1.822e-56
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 2

Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP VFFD++  G+P GR+  ELFAD  P+TAENFR
Sbjct:    1 MVNPTVFFDISADGEPLGRVSFELFADKVPKTAENFR 37

The following BLAST results are available for this feature:

BLAST of DC900340 vs. ExPASy Swiss-Prot

BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
PPIA_PANTR	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl...	[more]
PPIA_PANPA	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Pan panis...	[more]
PPIA_MACMU	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu...	[more]
PPIA_HYLSY	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Hylobates...	[more]
PPIA_HYLLE	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Hylobates...	[more]
PPIA_HYLLA	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Hylobates...	[more]
PPIA_HUMAN	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi...	[more]
PPIA_GORGO	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g...	[more]
PPIA_CERAE	1.071e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Cercopith...	[more]
PPIA_CRIGR	1.822e-56	66.42	Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA