DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.654e-54
Identity = 87/134 (64.93%), Postives = 98/134 (73.13%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G       YKGS+FHRVIPGFMCQ            +SIYG KFADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   38 ALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          

HSP 2 Score: 52.373 bits (124), Expect = 1.654e-54
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M  P+VFFD+   G+  GRIVMEL ADV P+TAENFR
Sbjct:    1 MAKPQVFFDLQANGENLGRIVMELRADVVPKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.772e-54
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG+GK+GKPLH+KGS FHRVI  FM Q            ESIYG KFADENF  KH  PG+LSMANAGP TNGSQFF+      WLDGKHVVFG+VVEG+++++ +E  GS SG+T + +VI+DCG++
Sbjct:   37 ALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          

HSP 2 Score: 55.8398 bits (133), Expect = 4.772e-54
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            KVFFD+T+G   AGRIVMELF +VTP+TAENFR
Sbjct:    4 KVFFDITIGSDTAGRIVMELFDEVTPKTAENFR 36          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 6.743e-53
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG+GKSGKPLHYKGS FHR+IP FM Q            ESIYG KFADENF  KHTGPG+LSMAN+G  TNGSQFF+ T  T WLDG+HVVFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:   66 ALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          

HSP 2 Score: 43.8986 bits (102), Expect = 6.743e-53
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            KV+FD+ + G+ AGR+V+ LF    P+TAENFR
Sbjct:   33 KVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFR 65          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.491e-52
Identity = 85/134 (63.43%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G       YKGS FHRVIP FMCQ            +SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  101 ALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          

HSP 2 Score: 54.6842 bits (130), Expect = 1.491e-52
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:   44 SKMPN-PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            SKM   P+VFFDMT   +P GRIVMEL +DV P+TAENFR
Sbjct:   61 SKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFR 100          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.545e-52
Identity = 83/134 (61.94%), Postives = 94/134 (70.15%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G SGKPLHYKGS FHR+IPGFM Q            ESIYG KF DENF  KHTG G+LSMANAGP TNGSQFF+   KT WLDG H VFGQ+VEG  V++ +E+ G+ SG     V I DCG++
Sbjct:   41 ALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          

HSP 2 Score: 52.7582 bits (125), Expect = 2.545e-52
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            PKVFFD+ V G+P+GR+  +LF+D  P+TAENFR
Sbjct:    7 PKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFR 40          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.642e-52
Identity = 89/137 (64.96%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 563
            ALCTGEKGIG SGK + Y+GS FHRVIP FM Q            ESIYG+KFADENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   35 ALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          

HSP 2 Score: 56.225 bits (134), Expect = 5.642e-52
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2
Query:   68 FFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            FFDMT+GGQPAGRI+MELF DV P+TAENFR
Sbjct:    5 FFDMTIGGQPAGRIIMELFPDV-PKTAENFR 34          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.623e-51
Identity = 88/134 (65.67%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKGIGK+GK LHYKGSSFHR+IP FM Q            ESIYG KFADENF  KHTGPG LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:   69 ALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          

HSP 2 Score: 44.2838 bits (103), Expect = 1.623e-51
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            KV+FD+ + G+ AGRIVM LF    P+T ENFR
Sbjct:   36 KVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFR 68          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.100e-51
Identity = 84/135 (62.22%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+GK GKPLHYKGS+FHRVI  FM Q            ESIYG+KF DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G  VV+ IE + +   +  K  VIADCG+LS
Sbjct:   46 ALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          

HSP 2 Score: 55.0694 bits (131), Expect = 2.100e-51
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2
Query:   29 SPINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            S  +  K    +VFFD+T+GG+ AGRIV EL+ D+ P+TAENFR
Sbjct:    2 SSTDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFR 45          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.038e-50
Identity = 83/124 (66.94%), Postives = 91/124 (73.39%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 533
            ALCTGEKG G       YKGS+FHRVIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:   81 ALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          

HSP 2 Score: 51.2174 bits (121), Expect = 1.038e-50
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 2
Query:   38 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            + S   NP V+ D+   GQP GR+V+EL ADV P+TAENFR
Sbjct:   40 SSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFR 80          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.309e-50
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G       YKG SFHRVIP FM Q            +SIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+ T K  WLDGKHVVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   38 ALCTGEKGFG-------YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          

HSP 2 Score: 56.9954 bits (136), Expect = 2.309e-50
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NPKVFFD++   +P GRIVMEL ADV P+TAENFR
Sbjct:    1 MSNPKVFFDVSANSKPLGRIVMELRADVVPQTAENFR 37          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIA_HEMPU1.654e-5464.93Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPI2_SYNY34.772e-5461.19Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP19D_ARATH6.743e-5366.42Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIA_DROME1.491e-5263.43Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CYP5_RHIOR2.545e-5261.94Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
CYPX_USEUD5.642e-5264.96Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CP20A_ARATH1.623e-5165.67Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPID_NEUCR2.100e-5162.2241 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIF_BOVIN1.038e-5066.94Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA1_RHIOR2.309e-5061.19Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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