DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.876e-50
Identity = 81/135 (60.00%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG GKSGKPL Y+GS FHR+I  FM Q            ESIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   38 ALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          

HSP 2 Score: 59.3066 bits (142), Expect = 3.876e-50
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP+V+FD+T+G +P GRIV ELF D+ P+TAENFR
Sbjct:    1 MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.641e-50
Identity = 82/134 (61.19%), Postives = 97/134 (72.39%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG+G SGKPLHYK S FHR+IP FM Q            ESIYG KF DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:   64 ALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          

HSP 2 Score: 43.1282 bits (100), Expect = 6.641e-50
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            KVFFD+ +  +PAGRIV  L+    P+T ENFR
Sbjct:   31 KVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFR 63          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.461e-49
Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGE G G       YK SSFHR+IP FMCQ            +SIYG KF DENFV KHTGPG LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  189 ALCTGEAGFG-------YKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          

HSP 2 Score: 43.1282 bits (100), Expect = 1.461e-49
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 2
Query:   26 FSPINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            + P ++ +    +V+ D+ +G   AGRI +EL  DV P+TAENFR
Sbjct:  144 YIPSSEKRGKKSRVYLDIQIGNTLAGRIEIELRGDVVPKTAENFR 188          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.208e-49
Identity = 84/136 (61.76%), Postives = 98/136 (72.06%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 566
            ALCTGEKG+G+SGKPL YKGS+FHRVI GFMCQ            ESIYG KF DE F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++G  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:   39 ALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          

HSP 2 Score: 49.6766 bits (117), Expect = 4.208e-49
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P VFFD+ +GGQ AGR+   L++D+ P+TAENFR
Sbjct:    5 PIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFR 38          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 4.262e-49
Identity = 85/134 (63.43%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G       YKGS FHR+IPGFMCQ            +SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   36 ALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          

HSP 2 Score: 47.3654 bits (111), Expect = 4.262e-49
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 2
Query:   62 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            K FFD+++GG+PAGRIV  LF DV P+T ENFR
Sbjct:    4 KCFFDISIGGKPAGRIVFALFDDV-PKTVENFR 35          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.555e-49
Identity = 80/133 (60.15%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            AL TGEKG         YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   38 ALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          

HSP 2 Score: 48.9062 bits (115), Expect = 5.555e-49
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M N  +FFD+TV G+P GRI ++ FAD  P+TAENFR
Sbjct:    1 MVNSVIFFDITVDGKPLGRISIKQFADKIPKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.341e-49
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            LCT EKG G       +KGSSFHR+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  175 LCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          

HSP 2 Score: 50.447 bits (119), Expect = 9.341e-49
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 2
Query:   32 PINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            PI +    NP+V+ D+ +G +PAGRI M L +DV P TAENFR
Sbjct:  131 PIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFR 173          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.421e-49
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G SGKPLHYK S FHR+IPGFM Q            ESIYG  F DENF  KH G G+LSMANAGP TNGSQFF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   41 ALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          

HSP 2 Score: 50.447 bits (119), Expect = 9.421e-49
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            PKVFFD+ V GQ +GR+  +LF+D  P+TAENFR
Sbjct:    7 PKVFFDIAVNGQHSGRMTFKLFSDTVPKTAENFR 40          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.518e-48
Identity = 77/134 (57.46%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGE+G G       Y    FHRVIP FMCQ            +SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  146 ALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          

HSP 2 Score: 52.373 bits (124), Expect = 3.518e-48
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P+VFFD+ +G   AGRIVMEL +D+ PRTAENFR
Sbjct:  112 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFR 145          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.579e-48
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            LCT EKG G       +KGSSFHR+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  175 LCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          

HSP 2 Score: 48.521 bits (114), Expect = 4.579e-48
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 2
Query:   32 PINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P  +    NP+V+ D+ +G +PAGRI M L +DV P TAENFR
Sbjct:  131 PAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFR 173          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPID_RHIOR3.876e-5060.00Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIB_DICDI6.641e-5061.19Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIE_RHIOR1.461e-4964.18Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPID_AMAMU4.208e-4961.76Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIA_ECHGR4.262e-4963.43Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PAL4A_HUMAN5.555e-4960.15Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIE_HUMAN9.341e-4959.09Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
CYP6_RHIOR9.421e-4958.96Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIE_SCHMA3.518e-4857.46Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_PONAB4.579e-4859.09Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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