DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.627e-48
Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            AL TGEKG         YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   38 ALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          

HSP 2 Score: 47.7506 bits (112), Expect = 4.627e-48
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M N  VFFD+TV G+P GRI ++LFAD   +TAENFR
Sbjct:    1 MVNSVVFFDITVDGKPLGRISIKLFADKILKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.969e-48
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            LCT EKG G       +KGSSFHR+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  175 LCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          

HSP 2 Score: 48.521 bits (114), Expect = 5.969e-48
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 2
Query:   32 PINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P  +    NP+V+ D+ +G +PAGRI M L +DV P TAENFR
Sbjct:  131 PTAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFR 173          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.011e-47
Identity = 82/136 (60.29%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 566
            +LCTGEKGIGKSGKPLHYKGS FHRVI  FM Q            ESIYG+KF DE F  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + SG R  K  +I DCG+L+
Sbjct:   45 SLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          

HSP 2 Score: 52.7582 bits (125), Expect = 1.011e-47
Identity = 20/34 (58.82%), Postives = 30/34 (88.24%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P+V+FD+++GG+  GRI MEL+AD+ P+TA+NFR
Sbjct:   11 PRVYFDISIGGKSVGRITMELYADLVPKTADNFR 44          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.318e-47
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+GK GKPLH+KGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + + +    V IA+CG+L+
Sbjct:   41 ALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          

HSP 2 Score: 50.8322 bits (120), Expect = 1.318e-47
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P+VFFD+ +G Q  GRI  ELF DV P+TAENFR
Sbjct:    7 PRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFR 40          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.918e-47
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  162 ALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G + GKPLH+KG  FHR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   50 ALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          

HSP 2 Score: 59.6918 bits (143), Expect = 2.918e-47
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   44 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFR
Sbjct:   11 SNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFR 49          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.926e-47
Identity = 75/132 (56.82%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  165 LCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 560
            LCT EKG G       +KGSSFHR+IP FMCQ            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  175 LCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          

HSP 2 Score: 48.1358 bits (113), Expect = 2.926e-47
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 2
Query:   32 PINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P  +    NP+V+ D+ +G +PAGRI M L +DV P TAENFR
Sbjct:  131 PAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFR 173          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 150.599 bits (379), Expect = 3.804e-47
Identity = 78/135 (57.78%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  162 ALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKGIG + GKPLH+KG  FHR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM V K +E V     +  K  VIA+CG+L
Sbjct:   50 ALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          

HSP 2 Score: 59.3066 bits (142), Expect = 3.804e-47
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   44 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFR
Sbjct:   11 SNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFR 49          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.957e-47
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  162 ALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G + GKPLH+KG  FHR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   50 ALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          

HSP 2 Score: 59.6918 bits (143), Expect = 4.957e-47
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   44 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFR
Sbjct:   11 SNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFR 49          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 5.012e-47
Identity = 76/134 (56.72%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTG++G G       Y    FHRVIP FMCQ            +SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:   52 ALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          

HSP 2 Score: 50.8322 bits (120), Expect = 5.012e-47
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 2
Query:   59 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            P+VFFD+ +G    GRIVMEL +D+ PRTAENFR
Sbjct:   18 PRVFFDIRIGNADRGRIVMELRSDIVPRTAENFR 51          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.462e-46
Identity = 82/134 (61.19%), Postives = 94/134 (70.15%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG G       YKGS FHRVIP FM Q            +SIYG+KFADENFVK+H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   36 ALCTGEKGFG-------YKGSIFHRVIPQFMLQGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          

HSP 2 Score: 41.9726 bits (97), Expect = 2.462e-46
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 2
Query:   65 VFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            V+FD++  GQ  G+I  +L+ DV P+TAENFR
Sbjct:    4 VYFDVSADGQKLGKITFKLYDDVVPKTAENFR 35          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PAL4B_HUMAN4.627e-4859.40Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIE_MOUSE5.969e-4859.09Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPID_GIBZE1.011e-4760.29Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_EMENI1.318e-4757.78Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_MOUSE2.918e-4756.3040 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPIE_BOVIN2.926e-4756.82Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPID_BOVIN3.804e-4757.7840 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_RAT4.957e-4756.3040 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIE_SCHJA5.012e-4756.72Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIA_CANAL2.462e-4661.19Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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