DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.368e-22
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR  T+KYA
Sbjct:   85 TPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          

HSP 2 Score: 47.7506 bits (112), Expect = 1.368e-22
Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 3
Query:   60 SKRINKELKDLQKDPPASCS------AGPVADDMFHWQ---ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ +A G+F + I  P  YPF+PP V+F
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSF 83          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.393e-22
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  262 VTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   76 ITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          

HSP 2 Score: 51.6026 bits (122), Expect = 1.393e-22
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPP---ASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            + MA  RI +E K++ +       S     V D     +  I GP D+P+ GG F++ I  P  YPF PPKV F
Sbjct:    2 ANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRF 75          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.950e-21
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S+ A KR+ KEL+ L KD P    AGP +++ +F W   I GP D+P+A GVF   + FP DYP  PPK+ F
Sbjct:    2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTF 73          

HSP 2 Score: 51.2174 bits (121), Expect = 1.950e-21
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ +R ++E
Sbjct:   77 ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.956e-21
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  262 VTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG*EG 507
            +TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   + + A+ +T+  AM  +G
Sbjct:   74 LTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157          

HSP 2 Score: 59.3066 bits (142), Expect = 1.956e-21
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   51 QMASKRINKELKDLQKDPPASCSAGPVADD--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            Q +  R+ KE K++Q++  A      + DD  +F W A I GPS++P+ GGVF ++   P  YP +PP+V F
Sbjct:    2 QASRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRF 73          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.544e-21
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 456
            ++ ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++  D  +Y
Sbjct:   78 LSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          

HSP 2 Score: 60.4622 bits (145), Expect = 2.544e-21
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 3
Query:   60 SKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +KR+  EL  L      S SA PV D D+ +W   I GP D+P++G  F VS+ FP +YPF PP + F
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKF 77          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.547e-21
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 489
            TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   72 TKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 52.373 bits (124), Expect = 2.547e-21
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.547e-21
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 489
            TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   72 TKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 52.373 bits (124), Expect = 2.547e-21
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.547e-21
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 489
            TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   72 TKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 52.373 bits (124), Expect = 2.547e-21
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 3.307e-21
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  256 PSV---TKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG 498
            PSV   TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T D+  Y +  R  T  YA G
Sbjct:   69 PSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          

HSP 2 Score: 57.7658 bits (138), Expect = 3.307e-21
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3
Query:   63 KRINKELKDLQK-DPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            KR++KE    Q  D        PV D DMFHW+A I GP+++P+ GG +++ IH    YP  PP V F+
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQ 74          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.314e-21
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 489
            TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   72 TKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 51.9878 bits (123), Expect = 3.314e-21
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC37_ARATH1.368e-2248.75Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBCD4_DROME1.393e-2245.00Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC7_YEAST1.950e-2147.22Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC21_ARATH1.956e-2139.29Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_YEAST2.544e-2141.54Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2L3_MOUSE2.547e-2139.47Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.547e-2139.47Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.547e-2139.47Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC16_SCHPO3.307e-2141.86Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UB2L3_PONAB3.314e-2139.47Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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