DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.283e-19
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

HSP 2 Score: 46.595 bits (109), Expect = 8.283e-19
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.283e-19
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

HSP 2 Score: 46.595 bits (109), Expect = 8.283e-19
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.283e-19
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

HSP 2 Score: 46.595 bits (109), Expect = 8.283e-19
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.283e-19
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K+A
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

HSP 2 Score: 46.595 bits (109), Expect = 8.283e-19
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.064e-18
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 48.521 bits (114), Expect = 1.064e-18
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ KEL+D++  PP          D+   QA I GP+ +P+A GVF V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYF 82
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.401e-18
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K++
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156

HSP 2 Score: 46.9802 bits (110), Expect = 1.401e-18
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P+ +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.822e-18
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K D+ +YE   R+  ++ A
Sbjct:   81 LFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156

HSP 2 Score: 46.2098 bits (108), Expect = 1.822e-18
Identity = 22/76 (28.95%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +   R+ +E K  ++D P    A P        D+ +W+  I G   + + GG++ +++ FP +YP +PPK  F
Sbjct:    2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.822e-18
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  +R +YE   R+  +K++
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156

HSP 2 Score: 46.595 bits (109), Expect = 1.822e-18
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.341e-18
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 48.521 bits (114), Expect = 2.341e-18
Identity = 24/71 (33.80%), Postives = 37/71 (52.11%), Query Frame = 3 
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ KEL+D++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYF 82
[Close]
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.351e-18
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:  262 VTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSIC-SLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            V K++HPN++ S+G++CLD++ + WSP   +  V  S    LL  PNP DP   E A +   DRA YE   + + +KYA
Sbjct:   69 VNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147

HSP 2 Score: 45.8246 bits (107), Expect = 2.351e-18
Identity = 24/69 (34.78%), Postives = 36/69 (52.17%), Query Frame = 3 
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MAS    +E+ D+ K   +      V DD+  +  T  GP+DS + GGV+ + +  P  YP+K P V F
Sbjct:    1 MASPSKRREM-DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGF 68
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC9_RAT8.283e-1942.11SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE8.283e-1942.11SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN8.283e-1942.11SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK8.283e-1942.11SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBE2S_DROVI1.064e-1842.86Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC9A_DANRE1.401e-1840.79SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC9_SCHPO1.822e-1842.11SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC9B_DANRE1.822e-1840.79SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBE2S_DROMO2.341e-1841.56Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBC6_ARATH2.351e-1840.51Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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