DC900339 | Citrus Genome Database

Overview


Name	DC900339
Unique Name	DC900339
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.036e-18
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y + A   T+ +AMG
Sbjct:   80 LTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158

HSP 2 Score: 46.9802 bits (110), Expect = 3.036e-18
Identity = 22/64 (34.38%), Postives = 33/64 (51.56%), Query Frame = 3

Query:   69 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            + KE+  L  DPP      P  +D+     +I GP  +P+AGGVF + +    D+P  PP+  F
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYF 79

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.042e-18
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*E-GLGCT 519
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A   + G+G T
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPAKCGVGAT 169

HSP 2 Score: 47.7506 bits (112), Expect = 3.042e-18
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.042e-18
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*E-GLGCT 519
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A   + G+G T
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPAKCGVGAT 169

HSP 2 Score: 47.7506 bits (112), Expect = 3.042e-18
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 3.956e-18
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 47.7506 bits (112), Expect = 3.956e-18
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.958e-18
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +       Y   A+ +T+ +A
Sbjct:   83 LTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159

HSP 2 Score: 48.9062 bits (115), Expect = 3.958e-18
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            K++ +E+  L  DPP         +D+   QA+I GP+ +P+ GG+F + +    D+P  PPK  F
Sbjct:   17 KQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.689e-18
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 46.9802 bits (110), Expect = 6.689e-18
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A GVF V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.689e-18
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 46.9802 bits (110), Expect = 6.689e-18
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A GVF V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYF 82

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.732e-18
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 450
            VT  FHPN++S+G+ICLDILK++WS    +  +LLS+ SLL +PN + PL P  A +++   A
Sbjct:   99 VTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTA 161

HSP 2 Score: 43.8986 bits (102), Expect = 6.732e-18
Identity = 22/66 (33.33%), Postives = 33/66 (50.00%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ +EL  L        SA P +D++F W  TI G   + +    + +S+ FP  YP+  P V F
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.732e-18
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 450
            +T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   99 LTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161

HSP 2 Score: 45.8246 bits (107), Expect = 6.732e-18
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ +EL  L        SA P +D++F W  TI G + + +    + +S+ FP  YP+  P V F
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.776e-18
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 1

Query:  274 FHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +HPN+  +G+ICL IL E   W PA+T+ +++L +  LL  PNP+ P        +  ++A+Y+       ++Y+
Sbjct:   82 YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156

HSP 2 Score: 55.4546 bits (132), Expect = 6.776e-18
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPV--AD---DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +  +R+ +E K  +KD P    A PV  AD   D+  W+A I G   + +AGGV+ +++ +P +YP KPPKV F
Sbjct:    2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF 77

The following BLAST results are available for this feature:

BLAST of DC900339 vs. ExPASy Swiss-Prot

BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230


Match Name	E-value	Identity	Description
UBE2S_DANRE	3.036e-18	39.24	Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G...	[more]
UBE2S_DROSI	3.042e-18	40.23	Ubiquitin-conjugating enzyme E2 S OS=Drosophila si...	[more]
UBE2S_DROSE	3.042e-18	40.23	Ubiquitin-conjugating enzyme E2 S OS=Drosophila se...	[more]
UBE2S_DROME	3.956e-18	41.56	Ubiquitin-conjugating enzyme E2 S OS=Drosophila me...	[more]
UBE2S_NEMVE	3.958e-18	38.96	Ubiquitin-conjugating enzyme E2 S OS=Nematostella ...	[more]
UBE2S_DROYA	6.689e-18	41.56	Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya...	[more]
UBE2S_DROER	6.689e-18	41.56	Ubiquitin-conjugating enzyme E2 S OS=Drosophila er...	[more]
UBE2C_XENLA	6.732e-18	47.62	Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi...	[more]
UBE2C_HUMAN	6.732e-18	47.62	Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ...	[more]
UBC9_YEAST	6.776e-18	32.00	SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG