DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 8.688e-18
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRAKYETTARSWTQK 486
            ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:   71 SEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKK 157          

HSP 2 Score: 51.9878 bits (123), Expect = 8.688e-18
Identity = 23/69 (33.33%), Postives = 36/69 (52.17%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M S  +  E K+L  +P          D++  W   + GP D+ + GG+F   I FPP YP++PP++ F
Sbjct:    1 MVSSFLLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 8.697e-18
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 46.595 bits (109), Expect = 8.697e-18
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYF 82          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.130e-17
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+  NG IC++ LK+ W   L +  +LL+I  LL  PNP+  L  E   +       Y   AR  T+ +A
Sbjct:   82 LTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHA 158          

HSP 2 Score: 50.447 bits (119), Expect = 1.130e-17
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +++ KE+ DL   PP      P   D+   QATI GP  +P+ GG F + +    D+P  PPK  F
Sbjct:   16 RQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFF 81          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.131e-17
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 46.2098 bits (108), Expect = 1.131e-17
Identity = 23/71 (32.39%), Postives = 37/71 (52.11%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A GVF V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYF 82          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.142e-17
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL +L E   W P+++I ++L+ I  LL  PN +DP   E   +Y  +RA+YE   +    KYA
Sbjct:   81 LFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156          

HSP 2 Score: 47.7506 bits (112), Expect = 1.142e-17
Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A+ R+ +E K  +KD P    A PV +     ++F+W+  I G  D+ + GG++ + + F  D+P  PPK  F
Sbjct:    2 SGIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKF 77          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.480e-17
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 450
            +T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          

HSP 2 Score: 45.8246 bits (107), Expect = 1.480e-17
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ +EL  L        SA P +D++F W  TI G + + +    + +S+ FP  YP+  P V F
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.480e-17
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 450
            +T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          

HSP 2 Score: 45.8246 bits (107), Expect = 1.480e-17
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ +EL  L        SA P +D++F W  TI G + + +    + +S+ FP  YP+  P V F
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.912e-17
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+  NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 45.8246 bits (107), Expect = 1.912e-17
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYF 82          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.912e-17
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK+FHPN+  NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   83 LTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 45.8246 bits (107), Expect = 1.912e-17
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S    +++ +EL++++  PP          D+   QA I GP+ +P+A G+F V +    D+P  PPK  F
Sbjct:   12 SPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYF 82          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.920e-17
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  268 KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-TDRAKYETTARSWTQKYA 492
            K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K  D   Y+     +  KY+
Sbjct:  105 KMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          

HSP 2 Score: 49.6766 bits (117), Expect = 1.920e-17
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 3
Query:  126 PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            P+ D +F W A I GP  SPF   ++ + I  P +YP  PPK+ F
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKF 80          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC_ASFM28.688e-1839.08Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_DROAN8.697e-1841.56Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2S_BRAFL1.130e-1737.66Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2S_DROWI1.131e-1741.56Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBC9_CAEEL1.142e-1738.16SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBE2C_MACFA1.480e-1746.03Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.480e-1746.03Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2S_DROPS1.912e-1741.56Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.912e-1741.56Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBCX_PICAN1.920e-1740.26Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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