DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.481e-17
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 438
            ++++HPNI  +G +C+ IL     +EQ   WSPA  I  +LLS+ SLL +PNPD P   + A  Y+
Sbjct:   71 SEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136          

HSP 2 Score: 54.6842 bits (130), Expect = 2.481e-17
Identity = 22/69 (31.88%), Postives = 38/69 (55.07%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M S+ +  E + L ++P  +       +DM  W   + GP D+ + GG+F   + FPP+YP+ PP++ F
Sbjct:    1 MVSRFLMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.502e-17
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRA 450
            +T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K   A
Sbjct:   99 LTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          

HSP 2 Score: 45.0542 bits (105), Expect = 2.502e-17
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ +EL  L        SA P +D++F W  TI G + + +    + +S+ FP  YP+  P V F
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF 98          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.519e-17
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   ++  DR +YE   R+  +K++
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKFS 156          

HSP 2 Score: 42.3578 bits (98), Expect = 2.519e-17
Identity = 24/76 (31.58%), Postives = 38/76 (50.00%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ + +  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.265e-17
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +  AS  + K+LKDL K P    SAG V + ++F W  TI+GP D+ + GG F   + FP +YP  PP V F
Sbjct:    2 ASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRF 73          

HSP 2 Score: 50.0618 bits (118), Expect = 3.265e-17
Identity = 23/76 (30.26%), Postives = 42/76 (55.26%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R +++
Sbjct:   77 MWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFK 152          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.276e-17
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  262 VTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAK-YETTARSWTQKY 489
            VTK+FHPNI+   G ICLD+LK  WS   T+  V  SI +LL+ P  D PL  +  ++ +    K +++ AR +T+ Y
Sbjct:   70 VTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          

HSP 2 Score: 48.1358 bits (113), Expect = 4.276e-17
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 3
Query:   66 RINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            R+ KE K LQ +        P  + D++ W A I GP D+P+  G F + I  P +YP +PP + F
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.094e-17
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRAKYETTARSWTQK 486
            ++++HPNI  +G +C+ IL     +EQ   WSPA  I  +LLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:   71 SEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKK 157          

HSP 2 Score: 51.9878 bits (123), Expect = 7.094e-17
Identity = 21/69 (30.43%), Postives = 38/69 (55.07%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M S+ +  E + L ++P  +       +++  W   + GP D+ + GG+F   + FPP+YP+ PPK+ F
Sbjct:    1 MVSRFLIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.133e-17
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  262 VTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSIC-SLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EG 507
            +TK++HPN++  +GS+CLD++ + WSP   +  V  +    LL  PNP DPL  E A +   DR  YE   + + +KYA   EG
Sbjct:   69 ITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYAKPGEG 152          

HSP 2 Score: 40.0466 bits (92), Expect = 7.133e-17
Identity = 21/69 (30.43%), Postives = 33/69 (47.83%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M+S    +E+ D+ K   +      + D M  +     GP DS + GGV+ + +  P  YP+K P V F
Sbjct:    1 MSSPSKRREM-DMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGF 68          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.175e-17
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 3
Query:   45 NSQMASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            NSQ A   + K+LKDL K P    SAG V + ++F W  TI+GP D+ + GG F   + FP +YP  PP V F
Sbjct:    2 NSQ-ACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRF 73          

HSP 2 Score: 48.9062 bits (115), Expect = 7.175e-17
Identity = 22/76 (28.95%), Postives = 41/76 (53.95%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R +++
Sbjct:   77 IWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFK 152          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.199e-17
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 489
            +FHPN+  +G++CL IL+E   W PA+TI+++ + I  LL +PN  +P   E   +Y  +R +YE   R+  +K+
Sbjct:   81 LFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFRAQAKKF 155          

HSP 2 Score: 46.595 bits (109), Expect = 7.199e-17
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S +A  R+ +E K  +KD P    A P  +     ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F
Sbjct:    2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 77          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 9.218e-17
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M S+ +  E + L ++P  +       ++M  W   + GP+D+ + GG+F   I FPP+YP++PP++ F
Sbjct:    1 MVSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTF 69          

HSP 2 Score: 52.373 bits (124), Expect = 9.218e-17
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 438
            ++++HPNI S+G +C+ IL     +EQ   WSP   I  +LLS+ SLL +PN D P   + A  Y+
Sbjct:   71 SEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC_ASFWA2.481e-1742.42Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2C_MOUSE2.502e-1746.03Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC9_PAGMA2.519e-1740.79SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC7_ARATH3.265e-1743.06Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBCX_DICDI4.276e-1741.03Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC_ASFB77.094e-1736.78Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC4_ARATH7.133e-1739.29Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC13_ARATH7.175e-1745.21Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC9_MESAU7.199e-1737.33SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC_ASFP49.218e-1731.88Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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