DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 7.822e-15
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            R +     RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V
Sbjct:   95 RTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRV 165          

HSP 2 Score: 43.5134 bits (101), Expect = 7.822e-15
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 1
Query:  274 FHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:  177 FNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 253          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.041e-14
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          

HSP 2 Score: 31.9574 bits (71), Expect = 1.041e-14
Identity = 21/72 (29.17%), Postives = 34/72 (47.22%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  + GG F+ S      YP  PPKV
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKV 93          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.346e-14
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  277 HPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-TDRAKYETTARSWTQKYAM 495
            HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP P  PL  ++A++ K  D   Y +    +  +Y++
Sbjct:  122 HPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYYVGRYSI 196          

HSP 2 Score: 42.743 bits (99), Expect = 1.346e-14
Identity = 24/80 (30.00%), Postives = 40/80 (50.00%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAG-----------PVADDMFH-WQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            A KR+ +E + + K+     SA            PV++D F+ W A + GP+D+ +    + + I  P +YP +PPK  F
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTF 82          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.352e-14
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          

HSP 2 Score: 31.5722 bits (70), Expect = 1.352e-14
Identity = 21/72 (29.17%), Postives = 34/72 (47.22%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  + GG F+ S      YP  PPKV
Sbjct:   25 KKASAAQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKV 93          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.282e-14
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  268 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 471
            K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   D+ ++    R
Sbjct:  103 KIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          

HSP 2 Score: 29.6462 bits (65), Expect = 2.282e-14
Identity = 22/93 (23.66%), Postives = 39/93 (41.94%), Query Frame = 3
Query:    9 QTQTLRPQSLLRNSQMASK-----------RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            Q Q  + Q L +N+  + K           R+ K++++L+  P    +   + +        I+ P +  + GG F  +  F   YP  PPKV
Sbjct:    6 QLQQQKQQQLAKNAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKV 98          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-14
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          

HSP 2 Score: 30.8018 bits (68), Expect = 2.284e-14
Identity = 20/72 (27.78%), Postives = 33/72 (45.83%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKV 93          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-14
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          

HSP 2 Score: 30.8018 bits (68), Expect = 2.284e-14
Identity = 20/72 (27.78%), Postives = 33/72 (45.83%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKV 93          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-14
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   97 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          

HSP 2 Score: 30.8018 bits (68), Expect = 2.284e-14
Identity = 20/72 (27.78%), Postives = 33/72 (45.83%), Query Frame = 3
Query:   42 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV
Sbjct:   25 KKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKV 93          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.308e-14
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPAS----CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            ASKR+ KEL+DLQK+ P      CS     D++  W A ++ P   P+    F + I FP +YPF+PP V F
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKF 70          

HSP 2 Score: 49.2914 bits (116), Expect = 2.308e-14
Identity = 21/78 (26.92%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:   72 TRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.856e-14
Identity = 27/77 (35.06%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  268 KVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+  YE   + + ++YA
Sbjct:   71 KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          

HSP 2 Score: 37.3502 bits (85), Expect = 3.856e-14
Identity = 21/69 (30.43%), Postives = 32/69 (46.38%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            M+S    +E+ DL K   +      + D M  +     GP DS + GGV+ V +     YP+K P + F
Sbjct:    1 MSSPSKRREM-DLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGF 68          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2Z_HUMAN7.822e-1538.03Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC12_XENTR1.041e-1443.08NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBCX_PICPA1.346e-1441.33Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBC12_XENLA1.352e-1443.08NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_CANGA2.282e-1444.12NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_MOUSE2.284e-1443.08NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN2.284e-1443.08NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN2.284e-1443.08NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UB2L6_BOVIN2.308e-1441.67Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC4_WHEAT3.856e-1435.06Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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