DC900339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 9.017e-13 Identity = 24/78 (30.77%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495 TK++HPNI+ +G +CL ++ E W P +VL ++ L++ PN ++P+ E+A + D + A +T +Y + Sbjct: 72 TKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGV 149 HSP 2 Score: 42.3578 bits (98), Expect = 9.017e-13 Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 3 Query: 57 ASKRINKELKDLQKD-PPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260 ASKR+ KEL DL K+ PP ++ W ++ P P+ F + I FP +YP KPP + F Sbjct: 3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRF 70
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 1.415e-12 Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1 Query: 262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495 VT + H NIN+ G +C IL ++P + IS +L I LL +P+ +DPL +A +Y YE + K+A+ Sbjct: 1202 VTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279 HSP 2 Score: 40.817 bits (94), Expect = 1.415e-12 Identity = 19/74 (25.68%), Postives = 35/74 (47.30%), Query Frame = 3 Query: 45 NSQMASK--RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260 N++++ K R+ +E+ D+ K+ D+ W+ GP +P+ G +L I F +YP P + F Sbjct: 1128 NTKLSQKLIRVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRF 1201
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 1.517e-12 Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 277 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 387 HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+ Sbjct: 89 HPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125 HSP 2 Score: 42.743 bits (99), Expect = 1.517e-12 Identity = 19/73 (26.03%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY 266 +++A+ R+ KE + Q +PP+ V+D++ W + G + +A + + + FP YP + P+V F++ Sbjct: 13 TKIATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQH 84
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 2.549e-12 Identity = 22/86 (25.58%), Postives = 45/86 (52.33%), Query Frame = 1 Query: 265 TKVFHPNINSNGSICLDI------------LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 486 ++++HPN+ +G +C+ I E+W+P T+ ++LSI S+L+ PN + P E A ++ + +++ R +K Sbjct: 78 SEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163 HSP 2 Score: 45.8246 bits (107), Expect = 2.549e-12 Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 3 Query: 57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260 +S R + E+ + P G V D ++F WQ TI+GP ++ + GG F + FP +YP PP V F Sbjct: 10 SSSRSSSEIS--RTTPSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRF 76
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.286e-12 Identity = 24/71 (33.80%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 474 + K++HPNI+ G++CL+IL++ W+P L ++ +L+ + L PN +DPL E A D + + R+ Sbjct: 90 LNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160 HSP 2 Score: 32.7278 bits (73), Expect = 4.286e-12 Identity = 21/67 (31.34%), Postives = 32/67 (47.76%), Query Frame = 3 Query: 57 ASKRINKELKDLQKDPPASCS-AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254 A RI K++ DL+ S S P+ ++ H + + P + + GG F I +YP PPKV Sbjct: 24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKV 87
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.551e-12 Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 Query: 268 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 432 K+FHPNI+ G++CL+IL+E WSPAL + ++ + L +PNP+DPL + A + Sbjct: 102 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKL 156 HSP 2 Score: 26.9498 bits (58), Expect = 5.551e-12 Identity = 20/86 (23.26%), Postives = 34/86 (39.53%), Query Frame = 3 Query: 9 QTQTLRPQSLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQA----TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254 Q + S+ N A R+ ++L L P + + D Q+ I+ P + + G ++ F YP +PPKV Sbjct: 12 QKENENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKV 97
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12 Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 208 YPF----ISHLIIHS---SHRRWPSVTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492 YPF ++ +I H + + VT+++HPNI+S G+ICLDILK++W+ +LT+ VLLS+ ++L P P DP +A + + + TA WT +A Sbjct: 80 YPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 2.607e-11 Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 1 Query: 271 VFHPNINSNGSICLDILK------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459 ++HPN+ +G +C+ IL E WSP T+ VL+SI SLL DPN + P + A Y+ + +Y+ Sbjct: 83 IYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYK 157 HSP 2 Score: 37.7354 bits (86), Expect = 2.607e-11 Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 3 Query: 75 KELKDLQKDPPASCSAGPVADDMFHWQATIMGPS-DSPFAGGVFLVSIHFPPDYPFKPPKVAF 260 +EL D +K P+ ++F W +M + DS + GG F + FP D+PF PP+ F Sbjct: 17 RELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRF 79
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 2.663e-11 Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 271 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 474 ++HPNI+ +G+ICL++L+E WSP + + V+L + L +PN DPL + A D ++ET ++ Sbjct: 100 IYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQA 167 HSP 2 Score: 27.7202 bits (60), Expect = 2.663e-11 Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3 Query: 165 MGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254 + P + + GG F S+ F YP +PP V Sbjct: 65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTV 94
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 2.701e-11 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 Query: 277 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 387 HP++ SNG ICL IL E WSPAL++ V LSI S+L+ Sbjct: 81 HPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117 HSP 2 Score: 38.5058 bits (88), Expect = 2.701e-11 Identity = 22/68 (32.35%), Postives = 31/68 (45.59%), Query Frame = 3 Query: 63 KRINKELKDLQKDPPASCSAGP--VADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260 KR+ KEL LQ DPP + V + + W + G + + G F + F YPF P+V F Sbjct: 6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF 73 The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 230
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bpback to top |