DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.017e-13
Identity = 24/78 (30.77%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            TK++HPNI+ +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   D   +   A  +T +Y +
Sbjct:   72 TKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGV 149          

HSP 2 Score: 42.3578 bits (98), Expect = 9.017e-13
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 3
Query:   57 ASKRINKELKDLQKD-PPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            ASKR+ KEL DL K+ PP          ++  W   ++ P   P+    F + I FP +YP KPP + F
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRF 70          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.415e-12
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            VT + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YE     +  K+A+
Sbjct: 1202 VTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          

HSP 2 Score: 40.817 bits (94), Expect = 1.415e-12
Identity = 19/74 (25.68%), Postives = 35/74 (47.30%), Query Frame = 3
Query:   45 NSQMASK--RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            N++++ K  R+ +E+ D+ K+            D+  W+    GP  +P+  G +L  I F  +YP   P + F
Sbjct: 1128 NTKLSQKLIRVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRF 1201          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.517e-12
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query:  277 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 387
            HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+
Sbjct:   89 HPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          

HSP 2 Score: 42.743 bits (99), Expect = 1.517e-12
Identity = 19/73 (26.03%), Postives = 40/73 (54.79%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY 266
            +++A+ R+ KE  + Q +PP+      V+D++  W   + G   + +A   + + + FP  YP + P+V F++
Sbjct:   13 TKIATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQH 84          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 2.549e-12
Identity = 22/86 (25.58%), Postives = 45/86 (52.33%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDI------------LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 486
            ++++HPN+  +G +C+ I              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++   R   +K
Sbjct:   78 SEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          

HSP 2 Score: 45.8246 bits (107), Expect = 2.549e-12
Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +S R + E+   +  P      G V D ++F WQ TI+GP ++ + GG F   + FP +YP  PP V F
Sbjct:   10 SSSRSSSEIS--RTTPSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRF 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.286e-12
Identity = 24/71 (33.80%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 474
            + K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   PN +DPL  E A     D   + +  R+
Sbjct:   90 LNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160          

HSP 2 Score: 32.7278 bits (73), Expect = 4.286e-12
Identity = 21/67 (31.34%), Postives = 32/67 (47.76%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCS-AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            A  RI K++ DL+     S S   P+  ++ H +   + P +  + GG F   I    +YP  PPKV
Sbjct:   24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKV 87          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.551e-12
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  268 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 432
            K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +
Sbjct:  102 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKL 156          

HSP 2 Score: 26.9498 bits (58), Expect = 5.551e-12
Identity = 20/86 (23.26%), Postives = 34/86 (39.53%), Query Frame = 3
Query:    9 QTQTLRPQSLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQA----TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            Q +     S+  N   A  R+ ++L  L   P  + +     D     Q+     I+ P +  +  G    ++ F   YP +PPKV
Sbjct:   12 QKENENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKV 97          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  208 YPF----ISHLIIHS---SHRRWPSVTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            YPF    ++ +I H     + +   VT+++HPNI+S  G+ICLDILK++W+ +LT+  VLLS+ ++L  P P DP    +A  +  +   +  TA  WT  +A
Sbjct:   80 YPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.607e-11
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDILK------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +  +Y+
Sbjct:   83 IYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYK 157          

HSP 2 Score: 37.7354 bits (86), Expect = 2.607e-11
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 3
Query:   75 KELKDLQKDPPASCSAGPVADDMFHWQATIMGPS-DSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +EL D +K  P+         ++F W   +M  + DS + GG F   + FP D+PF PP+  F
Sbjct:   17 RELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRF 79          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 2.663e-11
Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  271 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 474
            ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +PN  DPL  + A     D  ++ET  ++
Sbjct:  100 IYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQA 167          

HSP 2 Score: 27.7202 bits (60), Expect = 2.663e-11
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  165 MGPSDSPFAGGVFLVSIHFPPDYPFKPPKV 254
            + P +  + GG F  S+ F   YP +PP V
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTV 94          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.701e-11
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query:  277 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 387
            HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:   81 HPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          

HSP 2 Score: 38.5058 bits (88), Expect = 2.701e-11
Identity = 22/68 (32.35%), Postives = 31/68 (45.59%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGP--VADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KR+ KEL  LQ DPP   +     V + +  W   + G   + + G  F +   F   YPF  P+V F
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF 73          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UB2L6_RAT9.017e-1330.77Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC4_MIMIV1.415e-1234.62Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC17_ARATH1.517e-1256.76Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBC7_WHEAT2.549e-1225.58Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC12_SCHPO4.286e-1233.80NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_YEAST5.551e-1245.45NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC21_CAEEL9.645e-1236.89Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC3_YEAST2.607e-1134.67Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC12_ASHGO2.663e-1136.76NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBE2W_HUMAN2.701e-1159.46Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
back to top