DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:160..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.379e-34
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  265 TKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +KTDR  +  TA+ WT+KYA
Sbjct:   72 TKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          

HSP 2 Score: 78.1814 bits (191), Expect = 6.379e-34
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   57 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            A KR+ KE+ D+ K PP+ CSA  V D++  W+AT+ GP  SPF  GVF + I  P DYPFKPP + F
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKF 70          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  178 TAHLLGVYFL-------YPFISHLIIHSSHRRWPSVTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +A+  GV+FL       YPF    I  +        TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   43 SAYQGGVFFLTVHFPTDYPFKPPKIAFT--------TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          

HSP 2 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  178 TAHLLGVYFL-------YPFISHLIIHSSHRRWPSVTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +A+  GV+FL       YPF    I  +        TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   43 SAYQGGVFFLTVHFPTDYPFKPPKIAFT--------TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          

HSP 2 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  178 TAHLLGVYFL-------YPFISHLIIHSSHRRWPSVTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +A+  GV+FL       YPF    I  +        TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   43 SAYQGGVFFLTVHFPTDYPFKPPKIAFT--------TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          

HSP 2 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.645e-32
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K +R +++  AR +T ++A
Sbjct:   77 TPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          

HSP 2 Score: 60.077 bits (144), Expect = 9.645e-32
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 3
Query:  117 SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            S G  +++++ W A I GP  +P+ GG+F +SI FP DYPFKPPK  F+
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFK 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.709e-31
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K + A+    AR WTQKYA+
Sbjct:   72 ITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          

HSP 2 Score: 56.9954 bits (136), Expect = 4.709e-31
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L ++P    +A P  ++  ++   + GP+DSPF GGVF + +  P DYP   PKV F
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRF 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.979e-31
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:   74 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          

HSP 2 Score: 59.6918 bits (143), Expect = 7.979e-31
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P    SA P  D+M ++   I+GP+ SP+ GGVF + +  P +YP   PKV F
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRF 73          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.295e-30
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            +TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:   74 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          

HSP 2 Score: 58.151 bits (139), Expect = 2.295e-30
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P    SA P  ++M ++   I+GP+ SP+ GGVF + +  P +YP   PKV F
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRF 73          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.295e-30
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR WT+ YA
Sbjct:   72 LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          

HSP 2 Score: 60.077 bits (144), Expect = 2.295e-30
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KRI KE + L  +P    SA P  D+  +++  I GP DSPF GGVF + +    DYP   PKV F
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRF 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.295e-30
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ DR  ++  AR + +++A
Sbjct:   77 TRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          

HSP 2 Score: 74.7146 bits (182), Expect = 2.295e-30
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  +S+R+ KE  DL++ P        V D++FHW  T +GPSDS +AGG F  S+ FP DYPF+PP + F
Sbjct:    5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEF 75          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBCB_DICDI6.379e-3454.55Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UB2D1_MOUSE6.425e-3261.95Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.425e-3261.95Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN6.425e-3261.95Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC31_ARATH9.645e-3255.26Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2N_DROME4.709e-3155.13Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC35_ARATH7.979e-3156.96Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH2.295e-3056.96Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_DICDI2.295e-3055.84Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC14_SCHPO2.295e-3044.16Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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