DC900339 | Citrus Genome Database

Overview


Name	DC900339
Unique Name	DC900339
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.297e-30
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149

HSP 2 Score: 52.373 bits (124), Expect = 2.297e-30
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.071e-30
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 456
            V+++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  ++ +Y
Sbjct:   73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137

HSP 2 Score: 75.8702 bits (185), Expect = 5.071e-30
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 3

Query:   57 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            A KR+  + K LQKDPP   S  P  +++ HW A I GP D+P+ GG F +++HF  DYP KPP V F
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.603e-30
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149

HSP 2 Score: 52.373 bits (124), Expect = 6.603e-30
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.603e-30
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149

HSP 2 Score: 52.373 bits (124), Expect = 6.603e-30
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.603e-30
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149

HSP 2 Score: 52.373 bits (124), Expect = 6.603e-30
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.603e-30
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149

HSP 2 Score: 52.373 bits (124), Expect = 6.603e-30
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.603e-30
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR-----SWT 480
            V+++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   + +Y    R     SWT
Sbjct:   73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150

HSP 2 Score: 72.7886 bits (177), Expect = 6.603e-30
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.120e-29
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 480
            V+++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y     E   +SWT
Sbjct:   73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150

HSP 2 Score: 72.7886 bits (177), Expect = 1.120e-29
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.458e-29
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 480
            V+++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  ++ +Y     E   +SWT
Sbjct:   73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150

HSP 2 Score: 70.4774 bits (171), Expect = 1.458e-29
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +++ F  DYP KPP V F
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.458e-29
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 480
            V+++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   73 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150

HSP 2 Score: 72.0182 bits (175), Expect = 1.458e-29
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A KR+ ++ K LQ DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F
Sbjct:    2 STPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72

The following BLAST results are available for this feature:

BLAST of DC900339 vs. ExPASy Swiss-Prot

BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230


Match Name	E-value	Identity	Description
UBE2N_MACFA	2.297e-30	57.69	Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic...	[more]
UBC3_ARATH	5.071e-30	52.31	Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t...	[more]
UBE2N_PONAB	6.603e-30	57.69	Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ...	[more]
UBE2N_MOUSE	6.603e-30	57.69	Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ...	[more]
UBE2N_HUMAN	6.603e-30	57.69	Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ...	[more]
UBE2N_BOVIN	6.603e-30	57.69	Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN...	[more]
UBC1_ARATH	6.603e-30	48.72	Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t...	[more]
UBC2_ARATH	1.120e-29	47.44	Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t...	[more]
UBC2_WHEAT	1.458e-29	48.72	Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest...	[more]
UBC2_MEDSA	1.458e-29	47.44	Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG