DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.898e-29
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++ A+   TAR+WT+ YAM
Sbjct:   72 MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          

HSP 2 Score: 52.373 bits (124), Expect = 1.898e-29
Identity = 25/66 (37.88%), Postives = 34/66 (51.52%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF 71          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.472e-29
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP KPP V F
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKF 72          

HSP 2 Score: 73.1738 bits (178), Expect = 2.472e-29
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            ++++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   73 ISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.180e-29
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  265 TKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EGL 510
            TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA    G+
Sbjct:   74 TKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          

HSP 2 Score: 68.1662 bits (165), Expect = 3.180e-29
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S   S+RI KEL D+Q+D  A      + DD+ H +    GP  +P+ GG F+V I  P DYPF+PPK+ F
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNF 72          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.219e-29
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            ++++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  RSW
Sbjct:   73 ISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          

HSP 2 Score: 72.7886 bits (177), Expect = 3.219e-29
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q DPPA  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP+V F
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKF 72          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.191e-29
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP KPP V F
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKF 72          

HSP 2 Score: 72.4034 bits (176), Expect = 4.191e-29
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 483
            ++++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ +R +Y     ET  +SW +
Sbjct:   73 ISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.105e-29
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 486
            V+KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK +R +YE   ++  ++
Sbjct:   73 VSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          

HSP 2 Score: 68.1662 bits (165), Expect = 7.105e-29
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP D+PF  G F ++I F  +YP KPP V F
Sbjct:    2 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRF 72          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.658e-28
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            ++++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   73 ISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          

HSP 2 Score: 73.1738 bits (178), Expect = 2.658e-28
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + + F   YP KPP+V F
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKF 72          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.661e-28
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            +TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K +  +    AR WT+KYA+
Sbjct:   71 LTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          

HSP 2 Score: 60.077 bits (144), Expect = 2.661e-28
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KRI KE++ L +DPP    A P  D++ +++ T+ GP  S + GG F + +  P +YP  PP V F
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRF 70          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.439e-28
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            ++++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:   73 ISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          

HSP 2 Score: 72.7886 bits (177), Expect = 3.439e-28
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q+DPP+  SA P+ D++  W A I+GPSD+PF  G F + + F   YP KPP+V F
Sbjct:    2 STPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKF 72          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.453e-28
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  265 TKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA  WT+ YA
Sbjct:   73 TKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          

HSP 2 Score: 62.3882 bits (150), Expect = 4.453e-28
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   60 SKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +KRI KE++ ++ DP A  +   V++ D+ H + T +GP  +P+ GG F+V I  P +YPFKPPK+ F
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQF 71          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2N_RAT1.898e-2956.41Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC2_ASPFU2.472e-2947.89Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC1_SCHPO3.180e-2944.58Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_TRIHA3.219e-2945.45Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI4.191e-2947.89Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBCD6_DROME7.105e-2946.67Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_NECHA2.658e-2842.86Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC13_SCHPO2.661e-2850.00Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_CANAL3.439e-2842.86Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC1_YEAST4.453e-2850.65Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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