DC900339 | Citrus Genome Database

Overview


Name	DC900339
Unique Name	DC900339
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 4.506e-28
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + +HF   YP KPP V F
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKF 72

HSP 2 Score: 70.0922 bits (170), Expect = 4.506e-28
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            ++++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:   73 ISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.506e-28
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSWT 480
            V+++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:   73 VSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150

HSP 2 Score: 72.0182 bits (175), Expect = 4.506e-28
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q+DPP   SA PVAD++  W A I+GP+++PF  G F + + F   YP KPP V F
Sbjct:    2 STTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.854e-28
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:   73 ISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138

HSP 2 Score: 70.8626 bits (172), Expect = 9.854e-28
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            +R+ ++ K LQ+DPPA  S  P  D++  W+A I GP ++PF  G F +S+ F  +YP KPP V F
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.897e-28
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 483
            ++++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:   73 ISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151

HSP 2 Score: 68.9366 bits (167), Expect = 9.897e-28
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q+D P+  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP V F
Sbjct:    2 STPAKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.935e-28
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 492
            +TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR WT+ YA
Sbjct:   72 LTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148

HSP 2 Score: 60.8474 bits (146), Expect = 9.935e-28
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 3

Query:   63 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            KRI KE + L  DP    +A P  D++ ++Q TI GP  SP+  G+F + ++ P DYP + PKV F
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRF 71

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.194e-27
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            V+K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   73 VSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138

HSP 2 Score: 67.0106 bits (162), Expect = 2.194e-27
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.194e-27
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            V+K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   73 VSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138

HSP 2 Score: 67.0106 bits (162), Expect = 2.194e-27
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.068e-26
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K +Q+DPPA  SA PV+D++  W A I+GP+D+PF  G F + + F   YP KPP V F
Sbjct:    2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKF 72

HSP 2 Score: 68.1662 bits (165), Expect = 1.068e-26
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 477
            V+ +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ ++ +Y     +T   SW
Sbjct:   73 VSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.391e-26
Identity = 31/66 (46.97%), Postives = 49/66 (74.24%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   73 LSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138

HSP 2 Score: 65.4698 bits (158), Expect = 1.391e-26
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRF 72

[Close]

BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.391e-26
Identity = 31/66 (46.97%), Postives = 49/66 (74.24%), Query Frame = 1

Query:  262 VTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 459
            ++K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   73 LSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138

HSP 2 Score: 65.4698 bits (158), Expect = 1.391e-26
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 3

Query:   48 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRF 72

The following BLAST results are available for this feature:

BLAST of DC900339 vs. ExPASy Swiss-Prot

BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230


Match Name	E-value	Identity	Description
UBC2_NEUCR	4.506e-28	46.48	Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr...	[more]
UBC2_YARLI	4.506e-28	43.59	Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo...	[more]
UBC1_CAEEL	9.854e-28	46.97	Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi...	[more]
UBC2_DEBHA	9.897e-28	43.04	Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ...	[more]
UBC13_YEAST	9.935e-28	50.65	Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce...	[more]
UBE2A_MOUSE	2.194e-27	48.48	Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ...	[more]
UBE2A_HUMAN	2.194e-27	48.48	Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ...	[more]
UBC2_SCHPO	1.068e-26	45.07	Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar...	[more]
UBE2B_RAT	1.391e-26	46.97	Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg...	[more]
UBE2B_RABIT	1.391e-26	46.97	Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG