CX043718

Overview
NameCX043718
Unique NameCX043718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9479 contig Csv1_Contig9479:1111..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_DEIRA (Citrate synthase OS=Deinococcus radiodurans GN=gltA PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = -2
Query:  329 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 790
            V+ ML+EIGTV+    +I G  + K K+ G GHRVYK +DPR++V+R  AE V +  G+    ++  A+EK  +  +    + +YPNVDFYSG +Y  +G   E+F  +FA+ R++G+ A   E     D +++RP   YTG   +HY+ +K+R
Sbjct:  227 VMTMLDEIGTVDKAEAYITGKLDNKEKIMGVGHRVYKYFDPRSRVLRDYAEHVANKEGKSNYYQILEAIEKIIV--DRMGAKGIYPNVDFYSGTVYSDLGIKKEYFTPIFALARISGWCASVIEY--SQDNRLLRPDAEYTGARDQHYVDIKDR 376          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_SULSO (Citrate synthase OS=Sulfolobus solfataricus GN=gltA PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 59/157 (37.58%), Postives = 93/157 (59.24%), Query Frame = -2
Query:  329 KMLNEIGTVENIPE-FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDP----LIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 784
            K   EIG    +   F + V N+K ++ GFGHRVYK YDPRAK+ +KLA    +++ R+       E+A  LE+  +    F  + +YPN DFYSG+++ A+GFP   F  LFA+ R  G+LAH  E +++   +++RP+ +Y G   + Y+ + +R
Sbjct:  227 KQFIEIGDPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLA---LTLIERNADARRYFEIAQKLEELGIKQ--FSSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHIIEYVEE-QHRLIRPRALYVGPEYQEYVSIDKR 377          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_PYRFU (Citrate synthase OS=Pyrococcus furiosus GN=gltA PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22
Identity = 59/153 (38.56%), Postives = 91/153 (59.48%), Query Frame = -2
Query:  329 LKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 787
            +K   EIG+ E + E+      +KRK+ G GHRVYK YDPRA++ +K A    S +G   L E+A  LE+  L +EY  K+ +  NVD++SGL++  M  P E +  +FA+ R+AG+ AH  E +     +I+RP+  Y G   + Y+P++ R
Sbjct:  232 IKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYA----SKLGDKKLFEIAERLER--LVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVS--HNRIIRPRLQYVGEIGKKYLPIELR 376          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_THEAC (Citrate synthase OS=Thermoplasma acidophilum GN=gltA PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.625e-22
Identity = 53/141 (37.59%), Postives = 89/141 (63.12%), Query Frame = -2
Query:  329 FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGR-DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFP--TEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 742
            F + + N K+++ GFGHRVYK YDPRAK+ + +AE++ S       + E+A  LE   +  + F  + +YPN D++SG++Y ++GFP     +  LFA+ R+ G+ AH+ E +++   +++RP+ VY G   R Y+P+ ER
Sbjct:  247 FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGI--KAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEE-QQRLIRPRAVYVGPAERKYVPIAER 384          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_STRMU (Citrate synthase OS=Streptococcus mutans GN=citZ PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21
Identity = 52/154 (33.77%), Postives = 87/154 (56.49%), Query Frame = -2
Query:  329 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 790
            V  ML EI    ++  +++   N K K+ GFGHRVY+  DPR K +R++A E+      D   +++  +E          K+ L PNVDFYS  +Y  +G  +  F ++FA+ R++G++AH +E     + K++RP+  YTG+    Y+P++ R
Sbjct:  226 VFDMLREIREYGDVDSYLQEKLNSKEKIMGFGHRVYQTQDPREKYLREMARELTKGTEHDIWYQLSKKVEICMKQ-----KKNLIPNVDFYSATVYHVLGIDSSIFTLIFAMSRVSGWIAHIQE--QQKNNKLIRPRSHYTGMRKLRYIPIERR 372          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_BACSU (Citrate synthase 1 OS=Bacillus subtilis GN=citA PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.217e-19
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = -2
Query:  365 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAA--LSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTG 790
            V KML +IG  E+   +++    +  ++ GFGHRVYK  DPRA+ +R+ AEEV    G D  +++A+ +E  A  L + Y   RKLY NV+FY+  + RA+ F  E F   F+  RM G+ AH  E  +  +  I RP   YTG
Sbjct:  220 VTKMLEDIGEKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEV---AGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMVGWCAHVLEQAE--NNMIFRPSAQYTG 358          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_MYCSM (Citrate synthase OS=Mycobacterium smegmatis GN=gltA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = -2
Query:  365 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTG 790
            V+  + EIG+ E  PE++ G  +RK K+ GFGHRVYKN D R   ++   E+V  +      +++   LE A      F   ++ PN+DF +G  Y  M FP E F  LF + R+ G+ AH  E        ++RP   Y+G
Sbjct:  234 VMHDMLEIGSAEKAPEWLHGKLSRKEKVMGFGHRVYKNGDSRVPTMKVALEQVAQVRDGQRWLDIYNTLESA-----MFAATRIKPNLDFPTGPAYYLMDFPIESFTPLFVMSRITGWTAHIMEQA--ASNALIRPLSEYSG 368          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY2_MYCTU (Putative citrate synthase 2 OS=Mycobacterium tuberculosis GN=citA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = -2
Query:  365 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD--EYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTG 790
            VL ML+E+    +    ++G+ +R  K+ GFGHRVY+  DPRA+V+R  AE + +     P  EVAVA+E+AALS+  E    R +  NV+F++ ++      P    P +F   R AG+ AH  E       K++RP  +Y G
Sbjct:  218 VLPMLDEVERAGDARSVVKGILDRGEKLMGFGHRVYRAEDPRARVLRAAAERLGA-----PRYEVAVAVEQAALSELRERRPDRAIETNVEFWAAVVLDFARVPANMMPAMFTCGRTAGWCAHILE--QKRLGKLVRPSAIYVG 354          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY2_MYCBO (Putative citrate synthase 2 OS=Mycobacterium bovis GN=citA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = -2
Query:  365 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD--EYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTG 790
            VL ML+E+    +    ++G+ +R  K+ GFGHRVY+  DPRA+V+R  AE + +     P  EVAVA+E+AALS+  E    R +  NV+F++ ++      P    P +F   R AG+ AH  E       K++RP  +Y G
Sbjct:  218 VLPMLDEVERAGDARSVVKGILDRGEKLMGFGHRVYRAEDPRARVLRAAAERLGA-----PRYEVAVAVEQAALSELRERRPDRAIETNVEFWAAVVLDFARVPANMMPAMFTCGRTAGWCAHILE--QKRLGKLVRPSAIYVG 354          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_BACCO (Citrate synthase OS=Bacillus coagulans GN=ctsA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 46/143 (32.17%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  365 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVY-KNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTG 790
            V++ML +  TVE     +    ++K K+ GFGHRVY K  DPRA ++++  +E+ ++ G D L+++  A E+    +     + L+PN+D+Y+  +Y  +G P   +  +F   R  G  AH  E  +  + +I RP+ +YTG
Sbjct:  230 VMEMLQDAQTVEGFKHLLHDKLSKKEKIMGFGHRVYMKKMDPRAAMMKEALKELSAVNGDDLLLQMCEAGEQIMREE-----KGLFPNLDYYAAPVYWKLGIPIPLYTPIFFSSRTVGLCAHVMEQHE--NNRIFRPRVLYTG 365          
The following BLAST results are available for this feature:
BLAST of CX043718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CISY_DEIRA8.704e-2638.96Citrate synthase OS=Deinococcus radiodurans GN=glt... [more]
CISY_SULSO6.897e-2337.58Citrate synthase OS=Sulfolobus solfataricus GN=glt... [more]
CISY_PYRFU1.536e-2238.56Citrate synthase OS=Pyrococcus furiosus GN=gltA PE... [more]
CISY_THEAC7.625e-2237.59Citrate synthase OS=Thermoplasma acidophilum GN=gl... [more]
CISY_STRMU4.943e-2133.77Citrate synthase OS=Streptococcus mutans GN=citZ P... [more]
CISY_BACSU1.217e-1939.58Citrate synthase 1 OS=Bacillus subtilis GN=citA PE... [more]
CISY_MYCSM9.646e-1735.21Citrate synthase OS=Mycobacterium smegmatis GN=glt... [more]
CISY2_MYCTU9.646e-1736.81Putative citrate synthase 2 OS=Mycobacterium tuber... [more]
CISY2_MYCBO9.646e-1736.81Putative citrate synthase 2 OS=Mycobacterium bovis... [more]
CISY_BACCO1.393e-1532.17Citrate synthase OS=Bacillus coagulans GN=ctsA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A05-B9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043718 ID=CX043718; Name=CX043718; organism=Citrus sinensis; type=EST; length=791bp
GCATGATCGAGTAAGAGCAGCTCTGGAAATTCCAAATATAGAATCACACG
ACAGTTTCCCCTAATACACAGTGTGCGTGTGTGTTTATGTTACCAGTACA
AGGAACCAAAAAACATATGAACCTGCTACTTCTGTAGAAGATATTCAAAC
AGAAAACCAGAGGCCTGTAATTATTATTTTTCTTTATAATATTCATGTCA
TTTATTTTTCTTCTCTGAATATTTATTCATGAAGCCAAAAACATTTAATT
CCCTGATCCAGCGAGTCTTCGTCTTGTGGCATTTGAAACAGACACCTGTC
CAAGCCTGTCTGCATTCTTCTCTATCATCCGCTCTTTGAGTGGCATATAA
TGTCGCATCCATACACCAGTATAAACCTGTTGGGGTCTCATTATCTTTGT
GTCAGGATCATCCAAGGACTCTCGCCAGTGTGCTAAGTACCCAGCCATGC
GTGGGATGGCAAATAGAACAGGGAAAAACTCCGTTGGAAATCCCATTGCC
CTATATATCAACCCAGAGTAGAAGTCAACATTTGGATATAGCTTCCTCTT
AACAAAATACTCATCAGATAGTGCAGCCTTCTCCAAAGCAACAGCAACCT
CAATAAGAGGATCCCGGCCAACAATGGAAAATACTTCCTCTGCTAGTTTC
CTAATGACCTTTGCTCTGGGATCATAGTTTTTGTATACGCGGTGCCCAAA
ACCTGACATCTTCCTCTTTCTATTCTTCACACCTTCAATGAACTCGGGTA
TATTCTCAACTGTACCTATCTCATTCAGCATCTTAAGCACA
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