DC900335

Overview
NameDC900335
Unique NameDC900335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900335_ssr48 microsatellite DC900335_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:27..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E_CANAL (Eukaryotic translation initiation factor 4E OS=Candida albicans GN=TIF45 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.424e-22
Identity = 48/124 (38.71%), Postives = 76/124 (61.29%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAA--WXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKAN----LDTMWLETMMALIGEQF-DEVDEICGELL 433
            H L  +WT W+   +KP+   +  W   ++ V TF +VEEFW +Y  I   ++LP+ +D+HLFK GI P+WED   + GGKW  + N+K+     ++ +WL  ++A+IGE   DE +E+ G +L
Sbjct:   30 HPLNSRWTLWY---TKPQTNKSENWHDLLKPVITFSSVEEFWGIYNSIPPANQLPLKSDYHLFKEGIRPEWEDEANSKGGKWQFSFNKKSEVNPIINDLWLRGLLAVIGETIEDEENEVNGIVL 150          

HSP 2 Score: 26.5646 bits (57), Expect = 2.424e-22
Identity = 10/39 (25.64%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 540
            G+V ++R++  ++ +WTK   +E+    +G++ K++L +
Sbjct:  147 GIVLNIRKQAYRVGIWTKD-CDESKLKTVGERLKKVLQL 184          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E_ASHGO (Eukaryotic translation initiation factor 4E OS=Ashbya gossypii GN=TIF45 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQG--AAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN-RKANLDTMWLETMMALIGEQFDEVD-EICGELLLVYARG 451
            H L  KWT W+   +KP  G   +W   +R V +F TVEEFW +   I KP  LP+ +D+HLF+  I P+WED   + GGKWS     R   +D +WL  ++A+IGE  DE + EI G ++ V   G
Sbjct:   35 HPLNSKWTLWY---TKPPVGDNESWSDLLRPVTSFTTVEEFWAIQNAIPKPRELPLKSDYHLFRNDIRPEWEDEANSRGGKWSFQFKVRNPPIDDLWLRALLAVIGESIDEDEFEINGVVINVRRSG 158          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: I4E1B_MOUSE (Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.162e-21
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 2
Query:   65 PPQ--SQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDEVD-EICGELLLVYARGRTNLPYGPRQQQMKLLRWALERSGRRSLMSL 544
            PP+  S+LH L+ +W  WF    K  +  AW  +++ V  F+TVE+FW +Y  I   S+L    D+ LFK GI P WED     GG+W ++ +   R   LD +WLET++ L+G  F+E   E+CG ++ +            R ++ K+  W  E   +  +M +
Sbjct:   57 PPEVLSKLHPLQYRWVLWF---FKNDRSRAWQDNLQLVTKFNTVEDFWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDKQLRHFELDRLWLETLLCLVGNCFEEYSREVCGAVVNI------------RTKRDKIALWTSEAEDKAGVMQI 207          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.689e-21
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLV 439
            H L  K++ W+   +   +  ++  +++K+  F TVE FW  Y  + + S LP   D H FK GI P WED    NGGKW +  ++  +    W + ++AL+G+Q D+ D ICG +L V
Sbjct:   43 HPLRYKFSIWYTRRTPGVRNQSYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSA-RFWEDLLLALVGDQLDDADNICGAVLSV 160          

HSP 2 Score: 28.4906 bits (62), Expect = 5.689e-21
Identity = 11/32 (34.38%), Postives = 21/32 (65.62%), Query Frame = 1
Query:  415 DLWGVVASVRQRQDKLALWTKTAANEAAQMGI 510
            ++ G V SVR  +D +++W + A++  A MG+
Sbjct:  152 NICGAVLSVRFNEDIISVWNRNASDHQAVMGL 183          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 2
Query:   62 VPPQSQLHKLERKWTFWFDNIS--KPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLV 439
            V P    H L+  +TFW+   +  +P    ++  +++++ TF +VE+FW  Y  + +P  L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +EICG ++ V
Sbjct:   47 VVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 173          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 2
Query:   62 VPPQSQLHKLERKWTFWFDNIS--KPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLV 439
            V P    H L+  +TFW+   +  +P    ++  +++++ TF +VE+FW  Y  + +P  L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +EICG ++ V
Sbjct:   47 VVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSV 173          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_DANRE (Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.552e-17
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   89 LERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEV----DEICGELLLVYAR 448
            L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   S LP+   +HL +    P WE+   A GG W +   +++ L  +W E ++A IGEQF +     DE+ G  + V  R
Sbjct:   49 LHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTVQSFWSVYNNIPPVSCLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKESTL-AVWKELLLATIGEQFTDYCASEDEVVGVSVSVRER 171          

HSP 2 Score: 26.9498 bits (58), Expect = 2.552e-17
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTA--ANEAAQMG 507
            GV  SVR+R+D + +W   A  ANEA  +G
Sbjct:  163 GVSVSVREREDVVQVWNGNASFANEANVLG 192          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.304e-17
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   65 PPQSQLHKLERKWTF-WFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDT-MWLETMMALIGEQFDEVDEICG 424
            P  S  H+L+  +TF +F   +       + S ++ V    +VE+FW +     +P+ +   AD H FKTG++P WEDP    GGKW +    K  L T +W   +MA+IGEQF   DE+CG
Sbjct:   25 PVGSDDHQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWII--RLKKGLSTRIWENLLMAIIGEQFLVGDELCG 144          

HSP 2 Score: 27.7202 bits (60), Expect = 7.304e-17
Identity = 12/44 (27.27%), Postives = 24/44 (54.55%), Query Frame = 1
Query:  409 G*DLWGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 540
            G +L G V S+R ++D ++LW + A +      I +  + +L +
Sbjct:  139 GDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQL 182          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_MOUSE (Eukaryotic translation initiation factor 4E type 3 OS=Mus musculus GN=Eif4e3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.606e-16
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   62 VPPQSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEV----DEICG 424
            +PP+     L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   + LP+   +HL +    P WE+   A GG W +    K +  T+W E ++A IGEQF +     DEI G
Sbjct:   23 LPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKM-KVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIG 146          

HSP 2 Score: 23.0978 bits (48), Expect = 1.606e-16
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  415 DLWGVVASVRQRQDKLALWTKTAA 486
            ++ GV  SVR R+D + +W   A+
Sbjct:  143 EIIGVSVSVRDREDVVQVWNVNAS 166          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_XENTR (Eukaryotic translation initiation factor 4E type 3 OS=Xenopus tropicalis GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.733e-16
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   68 PQSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDE----VDEICG 424
            P ++   L   WTFW D        A   S+++K+YT  T++ FW +Y  I + + LP+   +HL +   +P WE+   A GG W +   ++A+   +W E ++A IGEQF +     DE+ G
Sbjct:   36 PDTEGIPLHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPQVTNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEAS-SLVWKELLLATIGEQFTDRCAPEDEVIG 157          

HSP 2 Score: 22.7126 bits (47), Expect = 7.733e-16
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTAA 486
            GV  SVR R+D + +W   A+
Sbjct:  157 GVSVSVRDREDVVQVWNGNAS 177          
The following BLAST results are available for this feature:
BLAST of DC900335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E_CANAL2.424e-2238.71Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E_ASHGO1.087e-2141.73Eukaryotic translation initiation factor 4E OS=Ash... [more]
I4E1B_MOUSE3.162e-2133.13Eukaryotic translation initiation factor 4E type 1... [more]
IF4E3_ARATH5.689e-2135.29Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_MOUSE3.496e-2036.72Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_HUMAN3.496e-2036.72Eukaryotic translation initiation factor 4E type 2... [more]
IF4E3_DANRE2.552e-1734.68Eukaryotic translation initiation factor 4E type 3... [more]
IF4E4_CAEEL7.304e-1736.89Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E3_MOUSE1.606e-1635.20Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_XENTR7.733e-1632.52Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionDC900335 VSS Citrus sinensis cDNA clone VS28685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900335 ID=DC900335; Name=DC900335; organism=Citrus sinensis; type=EST; length=545bp
AAACAAAGAAGAGAGAGATATGGCAACAAGTGAGGAGGCAAGCGCGACGG
CGGCGGCGGAGGTGCCGCCGCAATCACAGCTGCACAAGCTCGAGAGAAAA
TGGACGTTTTGGTTCGACAACATATCAAAGCCCAAACAGGGCGCCGCGTG
GNGCTCCTCTATGCGCAAAGTCTACACCTTCGACACTGTCGAAGAATTTT
GGTGTTTGTATGAACAGATATTCAAGCCAAGCCGGTTGCCAATGAATGCG
GATTTCCATTTGTTCAAAACTGGGATAGAACCAAAGTGGGAAGATCCTGA
GTGTGCAAATGGAGGAAAGTGGTCGGTCACTAGCAACAGGAAGGCTAACC
TTGATACCATGTGGCTTGAAACAATGATGGCCCTGATTGGAGAGCAATTT
GATGAGGTGGATGAGATTTGTGGGGAGTTGTTGCTAGTGTACGCCAGAGG
CAGGACAAACTTGCCTTATGGACCAAGACAGCAGCAAATGAAGCTGCTCA
GATGGGCATTGGAAAGAAGTGGAAGGAGATCCTTGATGTCACTGA
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