DC900335

Overview
NameDC900335
Unique NameDC900335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900335_ssr48 microsatellite DC900335_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:27..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: I4E3B_XENLA (Eukaryotic translation initiation factor 4E type 3-B OS=Xenopus laevis GN=eif4e3-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.733e-16
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 2
Query:   68 PQSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDE----VDEICG 424
            P ++   L   WTFW D        A   S+++K+YT  T++ FW +Y  I   S LP+   +HL +   +P WE+   A GG W +   ++A+   +W E ++A IGEQF +     DE+ G
Sbjct:   36 PDTEGIPLNSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPLVSNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEAS-SLVWKELLLATIGEQFTDHCSPEDEVIG 157          

HSP 2 Score: 22.7126 bits (47), Expect = 7.733e-16
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTAA 486
            GV  SVR R+D + +W   A+
Sbjct:  157 GVSVSVRDREDVVQVWNGNAS 177          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E3_HUMAN (Eukaryotic translation initiation factor 4E type 3 OS=Homo sapiens GN=EIF4E3 PE=2 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 1.004e-15
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 2
Query:   89 LERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEV----DEICG 424
            L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   + LP+   +HL +    P WE+   A GG W +    K +  T+W E ++A IGEQF +     DE+ G
Sbjct:   49 LHSSWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKM-KVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIG 163          

HSP 2 Score: 22.7126 bits (47), Expect = 1.004e-15
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTAA 486
            GV  SVR R+D + +W   A+
Sbjct:  163 GVSVSVRDREDVVQVWNVNAS 183          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: I4E3A_XENLA (Eukaryotic translation initiation factor 4E type 3-A OS=Xenopus laevis GN=eif4e3-A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.207e-15
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 2
Query:   68 PQSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDE----VDEICG 424
            P ++   L   WTFW D        A   S+++K+YT  T++ FW +Y  I   + LP+   +HL +   +P WE+   A GG W +   ++A+   +W E ++A IGEQF +     DE+ G
Sbjct:   36 PDTEGIPLHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPLVTNLPVRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEAS-SLVWKELLLATIGEQFTDRCAPEDEVIG 157          

HSP 2 Score: 22.7126 bits (47), Expect = 2.207e-15
Identity = 14/40 (35.00%), Postives = 22/40 (55.00%), Query Frame = 1
Query:  424 GVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVT 543
            GV  SVR R+D + +W    A+  A+  + +K  E+L  T
Sbjct:  157 GVSVSVRDREDIVQVWNGN-ASVVAEATVLEKIYELLPNT 195          
The following BLAST results are available for this feature:
BLAST of DC900335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
I4E3B_XENLA7.733e-1633.33Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_HUMAN1.004e-1535.34Eukaryotic translation initiation factor 4E type 3... [more]
I4E3A_XENLA2.207e-1532.52Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionDC900335 VSS Citrus sinensis cDNA clone VS28685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900335 ID=DC900335; Name=DC900335; organism=Citrus sinensis; type=EST; length=545bp
AAACAAAGAAGAGAGAGATATGGCAACAAGTGAGGAGGCAAGCGCGACGG
CGGCGGCGGAGGTGCCGCCGCAATCACAGCTGCACAAGCTCGAGAGAAAA
TGGACGTTTTGGTTCGACAACATATCAAAGCCCAAACAGGGCGCCGCGTG
GNGCTCCTCTATGCGCAAAGTCTACACCTTCGACACTGTCGAAGAATTTT
GGTGTTTGTATGAACAGATATTCAAGCCAAGCCGGTTGCCAATGAATGCG
GATTTCCATTTGTTCAAAACTGGGATAGAACCAAAGTGGGAAGATCCTGA
GTGTGCAAATGGAGGAAAGTGGTCGGTCACTAGCAACAGGAAGGCTAACC
TTGATACCATGTGGCTTGAAACAATGATGGCCCTGATTGGAGAGCAATTT
GATGAGGTGGATGAGATTTGTGGGGAGTTGTTGCTAGTGTACGCCAGAGG
CAGGACAAACTTGCCTTATGGACCAAGACAGCAGCAAATGAAGCTGCTCA
GATGGGCATTGGAAAGAAGTGGAAGGAGATCCTTGATGTCACTGA
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