DC900331

Overview
NameDC900331
Unique NameDC900331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1220
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.358e-27
Identity = 58/102 (56.86%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  340 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVTE 645
            GEKKRRL +EQV+ LE++F+  NKL+P+RK ++AR LGLQPRQVA+WFQNRRARWKTKQLE+D+  L+ +++A++AD +AL+     L AEI  L+ +  T+
Sbjct:   70 GEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKLPTK 171          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 8.799e-27
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  283 DAGEEANGEDDFSDDGSQA-------GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQY-EAVKADREALQAQNQKLHAEIMALKSREVTE 645
            D  EE   ED      +Q+       GEKKRRL +EQV+ LE++F+  NKL+P+RK ++AR LGLQPRQVA+WFQNRRARWKTKQLE+D+  L+ Q+ +A++AD +AL+     L AEI  L+ +  T+
Sbjct:   44 DEEEEEVDEDMAGGHAAQSPSPSCGLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIRELREKLPTK 172          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 9.729e-26
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  292 EEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 633
            ++  G       G   GEKKRRL  EQV+ LE++FE  NKL+PERK ++AR L L PRQVA+WFQNRRARWKTKQ+E+D+  L+ +++A++ + +AL+     L AEI  L+ R
Sbjct:   47 DDGGGGGGGGGGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDR 160          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 9.729e-26
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  292 EEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 633
            ++  G       G   GEKKRRL  EQV+ LE++FE  NKL+PERK ++AR L L PRQVA+WFQNRRARWKTKQ+E+D+  L+ +++A++ + +AL+     L AEI  L+ R
Sbjct:   23 DDGGGGGGGGGGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDR 136          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.076e-24
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  283 DAGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGN-KLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 633
            D  +E  G D+     S A  +KRRL  EQV+ LE++FE    KLEPERK +LAR LG+ PRQVA+WFQNRRARWKTKQLE D+D L+  ++ + A R AL A N+ L ++++ L  +
Sbjct:   63 DLVDELYGVDE--QGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEK 178          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.076e-24
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  283 DAGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGN-KLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 633
            D  +E  G D+     S A  +KRRL  EQV+ LE++FE    KLEPERK +LAR LG+ PRQVA+WFQNRRARWKTKQLE D+D L+  ++ + A R AL A N+ L ++++ L  +
Sbjct:    3 DLVDELYGVDE--QGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQVILLTEK 118          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.087e-24
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  286 AGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGN-KLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVTESINLNKETEGSCSNRSENSSD 708
            AG      D     G   GE+KRR   EQV++LE  F     KLEP  K +LAR LGLQPRQVAIWFQN+RARW++KQ+E DY  L+ QY+A+ A  E+L+ +   L A++  L+ +     +N  ++  GSC        D
Sbjct:   45 AGRGGGDGDGGGGGGGGGGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDELRGK-----LNERQDQSGSCDGGGAEGDD 181          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.338e-24
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  286 AGEEANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGN-KLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVTESINLNKETEGSCSNRSENSSD 708
            A     G+ D    G   GE+KRR   EQV++LE  F     KLEP  K +LAR LGLQPRQVAIWFQN+RARW++KQ+E DY  L+ QY+A+ A  E+L+ +   L  ++  L+ +     +N  ++  GSC        D
Sbjct:   44 AAGRGGGDGDGGGGGGGGGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGK-----LNERQDQSGSCDGGGAEGDD 180          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.460e-23
Identity = 56/112 (50.00%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  349 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVTESINLNKETEGSCS 684
            +RR + EQ+K+LE  FE   +LEP +K+QLAR LGLQPRQVAIWFQN+RARWK+KQLE +Y++L++ Y+ + +  E+L+ + Q L +E+  LK  E T+     +E E  CS
Sbjct:   33 QRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLK--EATQ--KKTQEEERQCS 140          
BLAST of DC900331 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.929e-22
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  295 EANGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMAL 624
            +  G+      G  A ++K+R + EQ+K+LE  F    KLEP +K+QLAR LGLQPRQVAIWFQN+RARWK+KQLE++Y  L+  Y+A+    E+L+ +   L  ++  L
Sbjct:   13 DVGGKGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKL 122          
The following BLAST results are available for this feature:
BLAST of DC900331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
HOX13_ORYSJ1.358e-2756.86Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX13_ORYSI8.799e-2750.39Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX8_ORYSJ9.729e-2650.00Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI9.729e-2650.00Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX25_ORYSJ1.076e-2450.85Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX25_ORYSI1.076e-2450.85Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX24_ORYSI4.087e-2442.96Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSJ5.338e-2442.25Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
ATHB7_ARATH3.460e-2350.00Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
HOX6_ORYSJ2.929e-2246.36Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionDC900331 VSS Citrus sinensis cDNA clone VS28681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900331 ID=DC900331; Name=DC900331; organism=Citrus sinensis; type=EST; length=1220bp
ATTCCTCATCCTTCTTTCTCAAGTTTGAACATGACAGTAAGATCATTACC
ACAGTTCTTAAGCATATTGGTGGGAAAAGTTTAGCTTAAGCTAGAGCTAG
CTAAGGTCATGTCTTGCAATGGGATGGCTTTCTTCCCAACAAATTTCATG
CTTCAAACTCCCCATGAAGATGAACATCAAACCCCCACTTCTCTCAATCC
AATTCTTCCCTCTTGTGCTCCCCAAGACTTTCATGGGGTTGCATCTTTCT
TAGGGAAGCGATCAATGTCATTTTCAGGGATTGATGCGGGAGAAGAAGCA
AATGGGGAGGATGATTTTTCTGATGATGGATCACAAGCAGGAGAGAAGAA
GAGGAGGCTTAATATGGAACAAGTGAAGACTCTTGAGAAGAACTTTGAAT
TGGGTAACAAGCTTGAGCCAGAGAGAAAAATGCAGTTGGCTAGGGCTCTT
GGGCTGCAACCAAGACAGGTTGCTATTTGGTTCCAAAACAGGAGAGCCAG
ATGGAAGACCAAGCAGCTGGAGAAAGACTATGATCTTCTCAAGAGACAAT
ATGAAGCAGTCAAAGCCGATCGCGAAGCACTCCAAGCTCAAAATCAGAAG
CTTCATGCAGAGATAATGGCTCTGAAAAGCAGGGAGGTGACTGAATCTAT
AAACCTCAATAAAGAAACTGAGGGGTCTTGCAGCAATAGAAGTGAGAACA
GTTCTGATATCAAGTTGGATATTTCAAGGACACCAGCCATTGACAGCCCT
ATGTCTACTCATCCAACAAGCAGAAACTTGTTTCCAACAAAATCAACATC
GTCGGTAAGGCCAACAGTAGCAGCACAACTTTTCCATAACTCATCATCGT
CAAGGCCTGATCTTCAATGCCAGAAGATTGAACAGAATATGCAGGGTACT
AAAGATCAAGAAAGCCTTAGCAGCATGTTCTGTGGCATGGATGATCAATC
TGGATTCTGGCCATGGTTGGAGCAACACAATTTCAGTTGAAATTAATCAT
CATCGACTCCAAATAAGCTAAGTGTCAAATTGTAATATANNCGTTTCCCT
GCACTGCTATGGCAATTTGCTTACCCTAGTTTTTTTCCGTATGAGTTTCT
TGTCCATGTTTTGGTACTTGTTAGAGTGGCTTATCAAGTAGAATATAATC
AAGTTGAGTACTTTCCATGAGGGCTGAAGATCTTTGTTATGAAGAAATAA
AAGGGTATGTGTTTTTGAGT
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