DC900329

Overview
NameDC900329
Unique NameDC900329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.472e-71
Identity = 140/237 (59.07%), Postives = 169/237 (71.31%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS---PQNKHIY--THGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +INSLP  K YA+RT+ F    G L+PLAIELS P        P++  +   T G D+T   IW LAKAHV  ND+G HQLV+HWL THA MEP+ IAT+R LS +HPIYKLL+PH R T+ IN LARQSLIN  GIIE SF PG+Y++E+SS+ YK+ W F  +ALPADL++RG+A EDPS P G+RLVIEDYPYA DGL IW AIK WV  YV+ +Y    +V  D ELQAWW E
Sbjct:  445 RINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDST---IWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKN-WVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKE 677          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.511e-71
Identity = 133/232 (57.33%), Postives = 162/232 (69.83%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN LP  K YA+RT+ F      L+PLAIELSLP       N  +           IW LAKA+V  ND+  HQL++HWL THA MEP++IAT+R LS +HPIYKLL PH R T+ INALARQSLIN GG+IE SF PG +A+E+SSA YKS W F  +ALPADL++RGMA EDPS P G+RLV+EDYPYA DGL IW  I+ WV+ YV+ +Y   ++V  D ELQAWW E
Sbjct:  444 RINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGKGANSRVILPADGGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLPGEFAVEMSSAVYKS-WVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKE 674          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.186e-70
Identity = 128/237 (54.01%), Postives = 160/237 (67.51%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGH----DATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            ++  L ++  Y SRT+FF    G LRP+AIEL+ P +    Q + ++T G       T  W W+LAK HV S+D G HQLV+HWL TH  +EPY+IA +RQLS MHPIY+LLHPH R+T+EINA AR  LI   GIIE +FSPG ++ME+SSAAY   WRFDMEALP DL+RRGMA         + L IEDYPYA DGLL+W AIK+W   YVAH+Y     +  D ELQ WW+E+
Sbjct:  506 RVRKLDNKTMYGSRTLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQLSQMHPIYRLLHPHFRFTMEINAQARGMLICADGIIEKTFSPGEFSMEISSAAYDKQWRFDMEALPEDLIRRGMAVRGED--GKLELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEV 740          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 6.186e-70
Identity = 131/234 (55.98%), Postives = 166/234 (70.94%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN L   KTYA+RT+ F  + G L+P+AIELSLP +    S     +     +     IW LAKA+V  ND+  HQL++HWL THA+MEP++IATHR LS +HPIYKLL PH R  + INALARQSLIN  GIIE +F P +Y++E+SSA YK+ W F  +ALPADL++RG+A +DPS P GVRL+IEDYPYAADGL IW AIK WV+ YV  +Y+  + V +D ELQ WW E
Sbjct:  419 QINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTFLPSKYSVEMSSAVYKN-WVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKE 651          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.990e-68
Identity = 126/234 (53.85%), Postives = 163/234 (69.66%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS--PQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            INSL    TYA+RT+ F      L+PLAIELSLP    +       ++T        W+W+LAKA+V  ND+G HQL++HWL THA MEP++IAT+RQLS  HP+YKLL PH R T+ INALARQ+LINGGGI E +  PG++A+ +SSA YK+ W F  + LP DL++RG+A +DPS PS V+L+I+DYPYA DGL IW AI++WV  Y A +Y     +  DVELQAWW E+
Sbjct:  439 INSLDGIFTYATRTLLFLRDDDTLKPLAIELSLPHIEGNLTSAKSKVHTPASSGIESWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVYKLLQPHYRDTMTINALARQTLINGGGIFEQTVFPGKHALAMSSAVYKN-WNFTEQGLPDDLIKRGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEV 671          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.790e-68
Identity = 125/227 (55.07%), Postives = 159/227 (70.04%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSP--QNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KTYASRT+ F    G L+PLAIELSLP            +YT         IW+LAKA+V  ND+GVHQL++HWL THA +EP++IAT+RQLS +HPI+KLL+PH R T+ INALARQ LIN GG++E++  P ++AME+S+  YK  W F  +ALPADL++RG+A ED S P GVRL+I+DYPYA DGL IW AIK WV  Y + +Y     +  D ELQAWW E+
Sbjct:  449 KTYASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVEGSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINALARQILINAGGVLESTVFPSKFAMEMSAVVYKD-WVFPDQALPADLVKRGVAVEDSSSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEV 674          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.790e-68
Identity = 129/235 (54.89%), Postives = 164/235 (69.79%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            +INS    K YA+RT+ F N    L+PLAIELSLP  +        ++Y    +     IW LAKA+V  ND+  HQLV+HWL THA +EP++IAT+R LS +HPIYKLL+PH R T+ IN+LAR SL+N GGIIE +F  GRY+ME+SS  YK+ W F  +ALPADL++RGMA EDPS P GV+LV+EDYPYA DGL IW  IK WV+ YV+ +Y+    +  D ELQAWW E+
Sbjct:  443 RINST-STKAYATRTILFLNNNQNLKPLAIELSLPHPQGDEHGAVSYVYQPALEGVESSIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSCLHPIYKLLYPHYRDTMNINSLARLSLVNDGGIIEKTFLWGRYSMEMSSKVYKN-WVFTEQALPADLIKRGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKEL 675          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.290e-67
Identity = 124/227 (54.63%), Postives = 157/227 (69.16%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KTYASRT+ F    G L+PL IELSLP            +YT G +     +W+LAKA V  ND+G HQL++HW+ THAS+EP++IAT+RQLS +HP++KLL PH R T+ INALARQ LINGGGI E +  P +YAME+SS  YK+ W F  +ALPA+L +RGMA EDP  P G+RL I+DYPYA DGL +W AI+ WV  Y+  FY     + +D ELQAWW E+
Sbjct:  448 KTYASRTLLFLKDDGTLKPLVIELSLPHPNGDKFGAVSEVYTPG-EGVYDSLWQLAKAFVGVNDSGNHQLISHWMQTHASIEPFVIATNRQLSVLHPVFKLLEPHFRDTMNINALARQILINGGGIFEITVFPSKYAMEMSSFIYKNHWTFPDQALPAELKKRGMAVEDPEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEV 673          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.092e-66
Identity = 123/234 (52.56%), Postives = 163/234 (69.66%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            +N L     YA+RT+FF    G L PLAIELS P  +   +     +YT        W+W+LAKA+V  ND+G HQL++HWL THA MEP++IAT+RQLS  HP++KLL PH R T+ INALARQ+LIN GGI E +  PG+YA+ +SS  YK+ W F  + LPADL++RG+A ED + P  VRL+I+DYPYAADGL IW AI++WV  Y+A +Y++   +  D ELQAWW+E+
Sbjct:  442 VNGLEGNFIYATRTLFFLRGDGTLAPLAIELSEPMIQGDVTAAKSTVYTPASTGVEAWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKYALWMSSMVYKN-WNFTEQGLPADLIKRGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEV 674          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.426e-66
Identity = 123/227 (54.19%), Postives = 159/227 (70.04%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KTYA+RT+FF    G L PLAIELS P  +         +Y    +    +IW LAKA+V  NDA  HQ+++HWL THA +EP++IAT+RQLS +HPIYKLL PH R T+ IN+LAR++L+N  GIIE +F  GRY+ME+S+  YK  W F  +ALP DL++RG+A +DPS P GVRL+IEDYPYA+DGL IW AIK WV+ YV+ +Y     +  D ELQAWW E+
Sbjct:  441 KTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIYKD-WVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKEL 666          
The following BLAST results are available for this feature:
BLAST of DC900329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOXX_SOYBN1.472e-7159.07Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXA_PHAVU2.511e-7157.33Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX22_HORVU6.186e-7054.01Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOYBN6.186e-7055.98Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_ORYSJ1.990e-6853.85Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXA_SOLLC5.790e-6855.07Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX3_PEA5.790e-6854.89Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_ARATH1.290e-6754.63Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_ORYSJ1.092e-6652.56Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX4_SOYBN1.426e-6654.19Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900329 VSS Citrus sinensis cDNA clone VS28679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900329 ID=DC900329; Name=DC900329; organism=Citrus sinensis; type=EST; length=826bp
AGAAAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTT
TTCTTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATC
CCTTCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATG
GNCATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTC
TGTTCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGAC
TCATGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTT
CAATGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTA
GAAATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAAT
TGAGGCTTCTTTCAGCCCAGGAAGGTATGCCATGGAGCTAAGCTCTGCAG
CCTACAAGAGTTTTTGGAGGTTTGACATGGAGGCATTGCCTGCAGATCTT
TTGCGCAGGGGTATGGCTGAGGAGGATCCTTCAATGCCTAGCGGTGTAAG
ACTTGTGATTGAAGACTACCCGTATGCAGCAGATGGGCTTCTTATCTGGT
GTGCTATAAAAGAGTGGGTAGAATCATATGTTGCACACTTCTACTCAGAA
CCAAATTCTGTCACGTCTGATGTTGAGCTCCAAGCATGGTGGAGTGAGAT
TAAGAACAAGGGCNCCATGACAAAGGGATGAGGCATGGNGGCCAACTTGA
ACCAAGAGACTGCTGGATATACATATGTCGGCTGATAGNAGAGCGCTACT
GCATCTTGGGATGCACGCCTAGACGC
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