DC900329

Overview
NameDC900329
Unique NameDC900329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.863e-66
Identity = 124/227 (54.63%), Postives = 158/227 (69.60%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KTYA+RT+FF    G L PLAIELS P  +         +Y   ++    +IW LAKA+V  ND+  HQLV+HWL THA +EP+++AT+RQLS +HP+YKLL PH R T+ IN+LAR+SL+N  GIIE +F  GRYA+ELS+  YK  W    +ALP DL++RG+A +DPS P GV+LVIEDYPYA+DGL IW AIK WV  YVA +Y     +  D ELQAWW E+
Sbjct:  335 KTYATRTIFFLKSDGTLAPLAIELSKPHPQGDEHGPVSEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVLATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYALELSAVIYKD-WSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKEL 560          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 126/227 (55.51%), Postives = 156/227 (68.72%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            K YA+RT+ F    G LRPLAIELSLP  +         ++    +     IW LAKA+V  ND+  HQLV+HWL THA +EP+IIAT+R LS +HPIYKLLHPH R T+ IN LAR SL+N GG+IE +F  GRY++E+S+  YK  W F  +ALPADL++RGMA EDPS P G+RLVIEDYPYA DGL IW AIK WV  YV  +Y   +++  D ELQA W E+
Sbjct:  446 KAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVYKD-WVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKEL 671          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 9.244e-66
Identity = 121/235 (51.49%), Postives = 164/235 (69.79%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNK--HIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            +INS  + KTYA+RT+      G L+PLAIELSLP  +         ++T         +W+LAKA+   ND+G HQL++HWL THA +EP+IIA++RQLS +HPI+KLLHPH R T+ INALAR  LIN  G++E +  P RYAME+SS+ YK+ W F  +ALP DLL+RG+A EDP+  +GV+L+IEDYP+A DGL IW AIK WV  Y   +Y+   +V +D E+Q+WW+E+
Sbjct:  463 RINST-NTKTYATRTLLLLQADGTLKPLAIELSLPHAQGESYGSVSKVFTPAEKGVEGSVWQLAKAYAAVNDSGYHQLISHWLQTHAVIEPFIIASNRQLSVVHPIHKLLHPHFRDTMNINALARHVLINSDGVLERTVFPSRYAMEMSSSIYKN-WVFTEQALPKDLLKRGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTEL 695          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.244e-66
Identity = 125/226 (55.31%), Postives = 160/226 (70.80%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            K YA+RT+ F  + G L+P+AIELSLP      S     +     +     IW LAKA+V  ND+  HQL++HWL THA +EP+IIAT+R LS++HPIYKLL PH R T+ INALARQSLIN  GIIE SF P ++++E+SSA YK+ W F  +ALPADL++RG+A +DPS P G+RL+IEDYPYA DGL IW AIK WV+ YV+ +Y+  + V  D ELQ WW E
Sbjct:  455 KAYATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKHSVEMSSAVYKN-WVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKE 679          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.577e-65
Identity = 121/227 (53.30%), Postives = 154/227 (67.84%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSP--QNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            K YASRT+ F    G L+PLAIELS P            +YT         IW+LAKA+V  ND GVHQL++HWL THA +EP++IAT+RQLS +HPI+KLL+PH R T+ INA ARQ L+N GG++E++    ++AME+S+  YK  W F  +ALPADL++RG+A ED S P GVRL+IEDYPYA DGL IW AIK WV  Y + +Y     +  D ELQAWW E+
Sbjct:  450 KAYASRTLLFLQDNGSLKPLAIELSFPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDVGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINASARQLLVNAGGVLESTVFQSKFAMEMSAVVYKD-WVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKEL 675          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 121/235 (51.49%), Postives = 158/235 (67.23%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KIN L     YASRT+      G L+PLAIELSLP            +YT  +      IW+LAKA+   ND+  HQL++HWL THA +EP++IAT+RQLS +HP++KLL PH R T+ INALARQ+LIN  GI E +  PG+YA+E+SS  YK+ W+F  +ALP DL++RG+A  DP+ P  VRL+I+DYPYA DGL+IW AI+ WV  Y+A +Y     +  D ELQAWW E+
Sbjct:  448 KINKLDGNFIYASRTILLLKDDGTLKPLAIELSLPHPDGQQHGAVSKVYTPANTGVESQIWQLAKAYASVNDSAWHQLISHWLNTHAVIEPFVIATNRQLSVVHPVHKLLSPHYRDTMNINALARQTLINADGIFEKTVFPGKYALEMSSVVYKN-WKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEV 681          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.022e-64
Identity = 124/235 (52.77%), Postives = 155/235 (65.96%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KIN   + K YASRT+ F      L+PLAIELSLP            +YT         IW+ AKA+V  ND G+HQL++HWL THA +EP+++AT+R LS +HPI+KLLHPH R T+ INALAR++L   GG  E S  P +Y+ME+S+AAYK  W F  +ALPADLL+RG+A ED S P G+RL+I DYPYA DGL IW AIK WV  Y   +Y    +V  D ELQAWW E+
Sbjct:  441 KINMSANTKAYASRTLLFLQDDRTLKPLAIELSLPHPDGDQFGTVSKVYTPADQGVEGSIWQFAKAYVAVNDMGIHQLISHWLNTHAVIEPFVVATNRHLSVLHPIHKLLHPHFRNTMNINALARETLTYDGG-FETSLFPAKYSMEMSAAAYKD-WVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKEL 673          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.884e-64
Identity = 120/234 (51.28%), Postives = 160/234 (68.38%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTH-WIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +N+LP    YA+RT+FF    G L PLAIELS P  +   +     +YT     +   W+W+LAKA+V  ND+G HQLV+HWL THA MEP++I+T+R LS  HP++KLL PH R T+ INALARQ+LIN GGI E +  PG++A+ +S+  YK  W+F  + LP DL++RGMA EDPS P  VRL++ DYPYAADGL IW AI+++V  Y+A +Y     +  D E+QAWW E
Sbjct:  437 VNNLPGNFIYATRTLFFLRGDGRLTPLAIELSEPIIQGGLTTAKSKVYTPVPSGSVEGWVWELAKAYVAVNDSGWHQLVSHWLNTHAVMEPFVISTNRHLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKFALGMSAVVYKD-WKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKE 669          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.288e-63
Identity = 125/241 (51.87%), Postives = 159/241 (65.98%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS---PQNKHIYTH------GHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            INSL D   YA+RT+ F    G L PLAIELSLP  +          +YT       G  A   W+W+LAKA+V  ND   HQL++HWL THA MEP++IAT+RQLS  HP++KLL PH R T+ INALARQ+LINGGGI E +  P ++A+ +SSA YK  W F  +ALP DL++RG+A  DP+ P  VRL+IEDYPYA DGL +W AI++W   Y+A +Y     +  D ELQAWW E+
Sbjct:  439 INSLDDNFIYATRTLLFLRGDGTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFPRKHALAMSSAFYKD-WSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEV 678          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.249e-62
Identity = 129/236 (54.66%), Postives = 160/236 (67.80%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLP-PTRSS--PQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KIN+    K YA+RTV F    G L+PLAIELS P P   S  P +K +Y    +     IW LAKA V  ND+  HQLV+HWL THA +EP+IIAT+R LS +HPI+KLL PH R T+ INALAR  L+N  GIIE++F  G YAME+S+  YK  W F  + LP DL++RG+A +DPS P GVRL+IEDYPYA+DGL IW AIK WVE YV  +Y    ++  D ELQA+W E+
Sbjct:  447 KINATAT-KAYATRTVLFLQDNGTLKPLAIELSTPHPDGDSFGPVSK-VYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAMEMSAVVYKD-WVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKEL 679          
The following BLAST results are available for this feature:
BLAST of DC900329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOXB_PHAVU1.863e-6654.63Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX3_SOYBN5.419e-6655.51Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX5_ARATH9.244e-6651.49Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX2_SOYBN9.244e-6655.31Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_SOLTU1.577e-6553.30Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX4_ORYSJ4.588e-6551.49Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOXB_SOLLC1.022e-6452.77Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_HORVU3.884e-6451.28Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX2_ORYSJ3.288e-6351.87Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_LENCU1.249e-6254.66Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900329 VSS Citrus sinensis cDNA clone VS28679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900329 ID=DC900329; Name=DC900329; organism=Citrus sinensis; type=EST; length=826bp
AGAAAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTT
TTCTTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATC
CCTTCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATG
GNCATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTC
TGTTCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGAC
TCATGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTT
CAATGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTA
GAAATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAAT
TGAGGCTTCTTTCAGCCCAGGAAGGTATGCCATGGAGCTAAGCTCTGCAG
CCTACAAGAGTTTTTGGAGGTTTGACATGGAGGCATTGCCTGCAGATCTT
TTGCGCAGGGGTATGGCTGAGGAGGATCCTTCAATGCCTAGCGGTGTAAG
ACTTGTGATTGAAGACTACCCGTATGCAGCAGATGGGCTTCTTATCTGGT
GTGCTATAAAAGAGTGGGTAGAATCATATGTTGCACACTTCTACTCAGAA
CCAAATTCTGTCACGTCTGATGTTGAGCTCCAAGCATGGTGGAGTGAGAT
TAAGAACAAGGGCNCCATGACAAAGGGATGAGGCATGGNGGCCAACTTGA
ACCAAGAGACTGCTGGATATACATATGTCGGCTGATAGNAGAGCGCTACT
GCATCTTGGGATGCACGCCTAGACGC
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