DC900329

Overview
NameDC900329
Unique NameDC900329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.632e-62
Identity = 121/228 (53.07%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   27 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTL-EINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            K YA+RT+ F  + G L+P+AIELSLP            +     +     IW LAKA+V  ND+  HQL++HWL THA +EP++IAT+RQLS +HPI KLL PH R T+  INALAR SLIN  G+IE SF P +YA+E+SSA YK +W F  +ALP DL++R MA +D S P G+RL+IEDYPYA DGL IW AIK WV+ YV+ +Y+  N + +D ELQ WW E+
Sbjct:  452 KAYATRTILFLKENGTLKPVAIELSLPHPDGDKSGFVSKVILPADEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVVHPINKLLAPHYRDTMMNINALARDSLINANGLIERSFLPSKYAVEMSSAVYK-YWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEV 678          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.394e-29
Identity = 81/211 (38.39%), Postives = 110/211 (52.13%), Query Frame = 3
Query:   69 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            G L PLAI+LS  P   SP    I+       + W W LAK  V +++  VH+   H+L TH   E + +AT RQL   HPIYKLL PH RYTL++N +AR +L+N  G+++   S GR  +    +   + + +    LP  L  RG+            L I +Y Y  DGL IW AI+ +V   V ++Y    SV  D ELQAW  EI
Sbjct:  359 GALVPLAIQLSQTPGPDSP----IFL---PTDSEWDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFAMATLRQLPLCHPIYKLLLPHTRYTLQVNTIARATLLNPEGLVDQVTSIGRQGLIYLMSTGLAHFTYTNFCLPDSLRARGV------------LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEI 550          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.056e-29
Identity = 86/232 (37.07%), Postives = 121/232 (52.16%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            INSL    T A   + + N  G+L PLAI+LS  P   SP    I+    D    W+  LAK  V +++  VH+   H+L TH   E + +AT RQL   HP+YKLL PH RYTL++N +AR +L+N  G+++   S GR  +    +   + + +    LP  +  RG+            L I +Y Y  DGL IW AI+ +V   V+++Y    SV  D ELQAW  EI
Sbjct:  339 INSLQQYVT-APLCLLWLNPQGVLLPLAIQLSQTPGPESP----IFLPT-DCELDWL--LAKTWVRNSEFLVHENNTHFLCTHLLCEAFSMATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFCLPDSIRARGV------------LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEI 550          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.198e-26
Identity = 76/212 (35.85%), Postives = 104/212 (49.06%), Query Frame = 3
Query:   66 AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            +G L P+AI+L   P   +P    I+    D    W W LAK  V +++  +H+ V H L  H   E + +AT RQL   HP++KLL PH+RYTL IN LAR+ L+  G +I+ S   G                + +  LP D+  RG+ +            I  Y Y  DG+ IW AIK +V   V+ +Y    SV  D ELQAW  EI
Sbjct:  324 SGPLLPIAIQLKQTPGPDNP----IFLPSDDT---WDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLFKLLIPHIRYTLHINTLARELLVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARGVED------------IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREI 516          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.595e-25
Identity = 86/255 (33.73%), Postives = 117/255 (45.88%), Query Frame = 3
Query:    6 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAM-ELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEIXXXXXXXXXXXXXANLNQETAG 767
            IN  P         ++     G L PLAI+LS  P  +SP    I+    D    W W LAK  V + +   H+ + H L +H   E + +AT RQL   HP++KLL PH RYTL IN LAR+ LI  G +++ S   G     EL     K    + +  LP D+  RG+ +            I  Y Y  DG+ IW A++ +V   +  +Y    SV  D ELQAW  EI               LNQE++G
Sbjct:  303 INGKPQFSAAPMTLLYQSPGCGPLLPLAIQLSQTPGPNSP----IFLPTDDK---WDWLLAKTWVRNAEFSFHEALTHLLHSHLLPEVFTLATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIVPGQVVDRSTGIGIEGFSELIQRNMKQL-NYSLLCLPEDIRTRGVED------------IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGF----------LNQESSG 527          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.721e-25
Identity = 74/211 (35.07%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   69 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            G L P+ I+L LP   SSP    + T         +W LAK  V S+D  VH+L +H L  H   E + +AT R L S+HP++KL+ PH+RYTLEIN  AR  L++  GI +   S G            +F  +     P DL  RG+            L +E   YA D L +W  I  +V+  +  +Y    +V  D+ELQ+W  EI
Sbjct:  310 GKLMPMVIQLHLPKIGSSPPPLFLPTD-----PPMVWLLAKCWVRSSDLQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREI 503          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 74/211 (35.07%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   69 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            G L P+ I+L LP   SSP    + T         +W LAK  V S+D  VH+L +H L  H   E + +AT R L S+HP++KL+ PH+RYTLEIN  AR  L++  GI +   S G            +F  +     P DL  RG+            L +E   YA D L +W  I  +V+  +  +Y    +V  D+ELQ+W  EI
Sbjct:  310 GKLMPMVIQLHLPKIGSSPPPLFLPTD-----PPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREI 503          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.034e-24
Identity = 71/224 (31.70%), Postives = 108/224 (48.21%), Query Frame = 3
Query:   33 YASRTVFFYNK-AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            YA   +F   K    L P+AI+    P   +     +     ++  +W W++AK  V   +   H++  H   TH   E + +AT R L+  HP++ LL PH   TL IN  A + L+   G I+  F+      + ++   +  + F    LP  L  R +  +DP       L + DYPY  DGLL+W AI++W   YVA +Y+    VT+DVEL AW  E+
Sbjct:  311 YAPIALFALGKDRARLLPVAIQCGQDP---ATHPMFVRPAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNV--DDP-------LALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV 522          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 69/224 (30.80%), Postives = 108/224 (48.21%), Query Frame = 3
Query:   33 YASRTVFFYNK-AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            YA   +F   K    L P+AI+    P   +     +     ++  +W W++AK  V   +   H++  H   TH   E + +AT R L+  HP++ LL PH   TL +N  A + L+   G I+  F+      + ++   +  + F    LP  L  R +  +DP+        + DYPY  DGLL+W AI++W   YVA +Y+    VT+DVEL AW  E+
Sbjct:  311 YAPIALFALGKDRARLLPVAIQCGQDP---ATHPMFVRPAESESDLYWGWQMAKTVVLVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFVNEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNV--DDPA-------ALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV 522          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.008e-24
Identity = 74/219 (33.79%), Postives = 114/219 (52.05%), Query Frame = 3
Query:   36 ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYA-MELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAW 689
            A   +F+ NK G L P+AI+++  P   +P    I+T  H+   H  W +AK  +   ++  HQL  H L TH + E + ++T R L+S HP++KLL PH+   L I+ + R+ LI  GGI++ S S G    +      +K     D   LP  L +RG+  +DPS   G       + Y  DGL +W AI+ ++   +A FY   + V  D E+Q+W
Sbjct:  696 APLALFYVNKLGHLMPIAIQINQEPGPENP----IWTP-HEENEH-DWMMAKFWLGVAESNFHQLNTHLLRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYH-LPNALKKRGV--DDPSKLPG-------FYYRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSW 898          
The following BLAST results are available for this feature:
BLAST of DC900329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_PEA1.632e-6253.07Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXE3_HUMAN1.394e-2938.39Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOXE3_MOUSE4.056e-2937.07Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LX15B_MOUSE4.198e-2635.85Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX15B_HUMAN1.595e-2533.73Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LOX12_RABIT2.721e-2535.07Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX15_RABIT3.554e-2535.07Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]
LOXA_PSEAE1.034e-2431.70Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LOX_PSEAE1.764e-2430.80Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
AOSL_PLEHO3.008e-2433.79Allene oxide synthase-lipoxygenase protein OS=Plex... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900329 VSS Citrus sinensis cDNA clone VS28679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900329 ID=DC900329; Name=DC900329; organism=Citrus sinensis; type=EST; length=826bp
AGAAAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTT
TTCTTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATC
CCTTCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATG
GNCATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTC
TGTTCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGAC
TCATGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTT
CAATGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTA
GAAATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAAT
TGAGGCTTCTTTCAGCCCAGGAAGGTATGCCATGGAGCTAAGCTCTGCAG
CCTACAAGAGTTTTTGGAGGTTTGACATGGAGGCATTGCCTGCAGATCTT
TTGCGCAGGGGTATGGCTGAGGAGGATCCTTCAATGCCTAGCGGTGTAAG
ACTTGTGATTGAAGACTACCCGTATGCAGCAGATGGGCTTCTTATCTGGT
GTGCTATAAAAGAGTGGGTAGAATCATATGTTGCACACTTCTACTCAGAA
CCAAATTCTGTCACGTCTGATGTTGAGCTCCAAGCATGGTGGAGTGAGAT
TAAGAACAAGGGCNCCATGACAAAGGGATGAGGCATGGNGGCCAACTTGA
ACCAAGAGACTGCTGGATATACATATGTCGGCTGATAGNAGAGCGCTACT
GCATCTTGGGATGCACGCCTAGACGC
back to top